Gene annotation
Transcriptome id Sobic.003G029500.1
Synonym Sb03g002770
Functional annotation zinc finger, C3HC4 type family protein, expressed
UniProt C5XLU4
Pfam PF00069 PF13639 PF00400
Panther DB PTHR22844 PTHR22844:SF215
NCBI CDD KOG0645; WD40 repeat protein KOG0279G protein beta subunit-like protein
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity GO:0008270zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G21651 : zinc ion binding
RAP-DB (Rice) LOC_Os05g34880.1 : zinc finger, C3HC4 type family protein, expressed
MaizeGDB (Corn) Zm00025a035844
Brachypodium -
Barley HORVU1Hr1G063720.5 , HORVU1Hr1G063720.4 , HORVU1Hr1G063720.7 , HORVU1Hr1G063720.6 , HORVU1Hr1G063720.3 , HORVU1Hr1G063720.2 , HORVU1Hr1G063720.8
Wheat TraesCS1A02G263800 , TraesCS1A02G263800 , TraesCS1D02G263900 , TraesCS1B02G274400 , TraesCS1B02G274400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G201000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
2 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
3 Sobic.006G051800 calmodulin-binding transcription activator 4, putative, expressed -
4 Sobic.009G040400 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
5 Sobic.003G003450 - K01177: beta-amylase
6 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
7 Sobic.010G092350 - -
8 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
9 Sobic.003G220100 - -
10 Sobic.001G394800 tetratricopeptide repeat domain containing protein, expressed -
11 Sobic.008G060000 receptor-like protein kinase 2 precursor, putative, expressed -
12 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
13 Sobic.010G132600 selenoprotein O, putative, expressed -
14 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
15 Sobic.003G057233 - -
16 Sobic.009G259100 CCT motif family protein, expressed -
17 Sobic.007G090900 heat shock protein-related, putative, expressed -
18 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
19 Sobic.009G073900 thioredoxin, putative, expressed -
20 Sobic.009G103000 ubiquitin family protein, putative, expressed -


Gene co-expression network
sample Sobic003G029500 Sobic003G029500 Sobic005G201000 Sobic005G201000 Sobic003G029500--Sobic005G201000 Sobic005G132000 Sobic005G132000 Sobic003G029500--Sobic005G132000 Sobic006G051800 Sobic006G051800 Sobic003G029500--Sobic006G051800 Sobic009G040400 Sobic009G040400 Sobic003G029500--Sobic009G040400 Sobic003G003450 Sobic003G003450 Sobic003G029500--Sobic003G003450 Sobic004G312600 Sobic004G312600 Sobic003G029500--Sobic004G312600 Sobic010G092350 Sobic010G092350 Sobic003G029500--Sobic010G092350 Sobic005G106600 Sobic005G106600 Sobic003G029500--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic003G029500--Sobic003G220100 Sobic005G201000--Sobic003G029500 Sobic005G201000--Sobic005G132000 Sobic005G201000--Sobic009G040400 Sobic005G201000--Sobic006G051800 Sobic007G010800 Sobic007G010800 Sobic005G201000--Sobic007G010800 Sobic010G150100 Sobic010G150100 Sobic005G201000--Sobic010G150100 Sobic005G201000--Sobic010G092350 Sobic003G057233 Sobic003G057233 Sobic005G201000--Sobic003G057233 Sobic001G298900 Sobic001G298900 Sobic005G201000--Sobic001G298900 Sobic005G132000--Sobic003G029500 Sobic005G132000--Sobic005G201000 Sobic009G259100 Sobic009G259100 Sobic005G132000--Sobic009G259100 Sobic005G132000--Sobic009G040400 Sobic005G132000--Sobic007G010800 Sobic007G146400 Sobic007G146400 Sobic005G132000--Sobic007G146400 Sobic010G132600 Sobic010G132600 Sobic005G132000--Sobic010G132600 Sobic002G295100 Sobic002G295100 Sobic005G132000--Sobic002G295100 Sobic005G132000--Sobic003G003450 Sobic006G051800--Sobic003G029500 Sobic009G074400 Sobic009G074400 Sobic006G051800--Sobic009G074400 Sobic004G231900 Sobic004G231900 Sobic006G051800--Sobic004G231900 Sobic002G383600 Sobic002G383600 Sobic006G051800--Sobic002G383600 Sobic006G219600 Sobic006G219600 Sobic006G051800--Sobic006G219600 Sobic004G189200 Sobic004G189200 Sobic006G051800--Sobic004G189200 Sobic006G257800 Sobic006G257800 Sobic006G051800--Sobic006G257800 Sobic006G051800--Sobic005G201000 Sobic008G167600 Sobic008G167600 Sobic006G051800--Sobic008G167600 Sobic009G040400--Sobic007G010800 Sobic009G040400--Sobic005G132000 Sobic003G105900 Sobic003G105900 Sobic009G040400--Sobic003G105900 Sobic009G040400--Sobic005G201000 Sobic009G040400--Sobic003G029500 Sobic009G040400--Sobic010G092350 Sobic002G275200 Sobic002G275200 Sobic009G040400--Sobic002G275200 Sobic002G356900 Sobic002G356900 Sobic009G040400--Sobic002G356900 Sobic002G138100 Sobic002G138100 Sobic009G040400--Sobic002G138100 Sobic009G073900 Sobic009G073900 Sobic003G003450--Sobic009G073900 Sobic001G077300 Sobic001G077300 Sobic003G003450--Sobic001G077300 Sobic001G509200 Sobic001G509200 Sobic003G003450--Sobic001G509200 Sobic006G213700 Sobic006G213700 Sobic003G003450--Sobic006G213700 Sobic002G081400 Sobic002G081400 Sobic003G003450--Sobic002G081400 Sobic006G232600 Sobic006G232600 Sobic003G003450--Sobic006G232600 Sobic006G090100 Sobic006G090100 Sobic003G003450--Sobic006G090100 Sobic007G087100 Sobic007G087100 Sobic003G003450--Sobic007G087100 Sobic001G207800 Sobic001G207800 Sobic003G003450--Sobic001G207800 Sobic007G227100 Sobic007G227100 Sobic004G312600--Sobic007G227100 Sobic004G127800 Sobic004G127800 Sobic004G312600--Sobic004G127800 Sobic008G038500 Sobic008G038500 Sobic004G312600--Sobic008G038500 Sobic001G331600 Sobic001G331600 Sobic004G312600--Sobic001G331600 Sobic002G382700 Sobic002G382700 Sobic004G312600--Sobic002G382700 Sobic002G293500 Sobic002G293500 Sobic004G312600--Sobic002G293500 Sobic004G312600--Sobic001G077300 Sobic004G312600--Sobic005G106600 Sobic004G312600--Sobic003G220100 Sobic010G223200 Sobic010G223200 Sobic010G092350--Sobic010G223200 Sobic010G092350--Sobic009G040400 Sobic010G207100 Sobic010G207100 Sobic010G092350--Sobic010G207100 Sobic004G300100 Sobic004G300100 Sobic010G092350--Sobic004G300100 Sobic010G092350--Sobic002G356900 Sobic004G271600 Sobic004G271600 Sobic010G092350--Sobic004G271600 Sobic010G092350--Sobic003G029500 Sobic002G060800 Sobic002G060800 Sobic010G092350--Sobic002G060800 Sobic002G291800 Sobic002G291800 Sobic010G092350--Sobic002G291800 Sobic005G106600--Sobic003G220100 Sobic001G333800 Sobic001G333800 Sobic005G106600--Sobic001G333800 Sobic009G038900 Sobic009G038900 Sobic005G106600--Sobic009G038900 Sobic001G133000 Sobic001G133000 Sobic005G106600--Sobic001G133000 Sobic005G106600--Sobic004G312600 Sobic007G058100 Sobic007G058100 Sobic005G106600--Sobic007G058100 Sobic007G136200 Sobic007G136200 Sobic005G106600--Sobic007G136200 Sobic005G106600--Sobic006G219600 Sobic001G378100 Sobic001G378100 Sobic005G106600--Sobic001G378100 Sobic003G220100--Sobic005G106600 Sobic003G220100--Sobic001G333800 Sobic003G220100--Sobic004G312600 Sobic003G220100--Sobic007G058100 Sobic003G220100--Sobic009G038900 Sobic003G220100--Sobic001G378100 Sobic001G169900 Sobic001G169900 Sobic003G220100--Sobic001G169900 Sobic003G073800 Sobic003G073800 Sobic003G220100--Sobic003G073800 Sobic010G002700 Sobic010G002700 Sobic003G220100--Sobic010G002700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.