Gene annotation
Transcriptome id Sobic.010G132600.2,Sobic.010G132600.1
Synonym
Functional annotation selenoprotein O, putative, expressed
UniProt A0A1W0VST0 , A0A1W0VSS3
Pfam PF02696
Panther DB PTHR32057
NCBI CDD KOG2542; Uncharacterized conserved protein (YdiU family)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G13030 : -
RAP-DB (Rice) LOC_Os06g21600.1 : selenoprotein O, putative, expressed
MaizeGDB (Corn) Zm00025a050632
Brachypodium KQK18467
Barley HORVU7Hr1G046290.4 , HORVU7Hr1G046290.5 , HORVU7Hr1G046290.2 , HORVU7Hr1G046290.3 , HORVU7Hr1G046290.1
Wheat TraesCS7A02G227000 , TraesCS7A02G227000 , TraesCS7D02G227400 , TraesCS7B02G192600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G257750 - -
2 Sobic.004G146600 lipase, putative, expressed -
3 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
4 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
5 Sobic.004G356700 oligopeptidase, putative, expressed K01414: oligopeptidase A
6 Sobic.003G057233 - -
7 Sobic.003G398700 expressed protein K15210: snRNA-activating protein complex subunit 3
8 Sobic.003G029500 zinc finger, C3HC4 type family protein, expressed -
9 Sobic.004G231900 ribonuclease protein, putative, expressed K18758: DIS3-like exonuclease 2
10 Sobic.008G054000 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
11 Sobic.003G388100 expressed protein -
12 Sobic.005G059800 RNA recognition motif containing protein, putative, expressed K14407: CSTF2, cleavage stimulation factor subunit 2
13 Sobic.001G298900 agenet domain containing protein, putative, expressed -
14 Sobic.005G038500 pentatricopeptide containing protein, putative, expressed -
15 Sobic.004G244900 expressed protein -
16 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
17 Sobic.003G264800 expressed protein -
18 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
19 Sobic.003G253600 protein kinase domain containing protein, expressed -
20 Sobic.008G044100 expressed protein -


Gene co-expression network
sample Sobic010G132600 Sobic010G132600 Sobic002G257750 Sobic002G257750 Sobic010G132600--Sobic002G257750 Sobic004G146600 Sobic004G146600 Sobic010G132600--Sobic004G146600 Sobic005G106600 Sobic005G106600 Sobic010G132600--Sobic005G106600 Sobic005G132000 Sobic005G132000 Sobic010G132600--Sobic005G132000 Sobic004G356700 Sobic004G356700 Sobic010G132600--Sobic004G356700 Sobic003G057233 Sobic003G057233 Sobic010G132600--Sobic003G057233 Sobic003G398700 Sobic003G398700 Sobic010G132600--Sobic003G398700 Sobic003G029500 Sobic003G029500 Sobic010G132600--Sobic003G029500 Sobic004G231900 Sobic004G231900 Sobic010G132600--Sobic004G231900 Sobic002G257750--Sobic003G398700 Sobic002G257750--Sobic005G106600 Sobic003G119600 Sobic003G119600 Sobic002G257750--Sobic003G119600 Sobic003G253600 Sobic003G253600 Sobic002G257750--Sobic003G253600 Sobic006G185100 Sobic006G185100 Sobic002G257750--Sobic006G185100 Sobic003G388100 Sobic003G388100 Sobic002G257750--Sobic003G388100 Sobic006G050700 Sobic006G050700 Sobic002G257750--Sobic006G050700 Sobic004G244900 Sobic004G244900 Sobic002G257750--Sobic004G244900 Sobic002G257750--Sobic010G132600 Sobic001G230000 Sobic001G230000 Sobic004G146600--Sobic001G230000 Sobic001G298900 Sobic001G298900 Sobic004G146600--Sobic001G298900 Sobic004G001500 Sobic004G001500 Sobic004G146600--Sobic004G001500 Sobic006G219600 Sobic006G219600 Sobic004G146600--Sobic006G219600 Sobic002G043800 Sobic002G043800 Sobic004G146600--Sobic002G043800 Sobic004G143475 Sobic004G143475 Sobic004G146600--Sobic004G143475 Sobic004G146600--Sobic010G132600 Sobic003G155100 Sobic003G155100 Sobic004G146600--Sobic003G155100 Sobic003G043200 Sobic003G043200 Sobic004G146600--Sobic003G043200 Sobic003G220100 Sobic003G220100 Sobic005G106600--Sobic003G220100 Sobic001G333800 Sobic001G333800 Sobic005G106600--Sobic001G333800 Sobic009G038900 Sobic009G038900 Sobic005G106600--Sobic009G038900 Sobic001G133000 Sobic001G133000 Sobic005G106600--Sobic001G133000 Sobic004G312600 Sobic004G312600 Sobic005G106600--Sobic004G312600 Sobic007G058100 Sobic007G058100 Sobic005G106600--Sobic007G058100 Sobic007G136200 Sobic007G136200 Sobic005G106600--Sobic007G136200 Sobic005G106600--Sobic006G219600 Sobic001G378100 Sobic001G378100 Sobic005G106600--Sobic001G378100 Sobic005G132000--Sobic003G029500 Sobic005G201000 Sobic005G201000 Sobic005G132000--Sobic005G201000 Sobic009G259100 Sobic009G259100 Sobic005G132000--Sobic009G259100 Sobic009G040400 Sobic009G040400 Sobic005G132000--Sobic009G040400 Sobic007G010800 Sobic007G010800 Sobic005G132000--Sobic007G010800 Sobic007G146400 Sobic007G146400 Sobic005G132000--Sobic007G146400 Sobic005G132000--Sobic010G132600 Sobic002G295100 Sobic002G295100 Sobic005G132000--Sobic002G295100 Sobic003G003450 Sobic003G003450 Sobic005G132000--Sobic003G003450 Sobic008G001200 Sobic008G001200 Sobic004G356700--Sobic008G001200 Sobic001G194200 Sobic001G194200 Sobic004G356700--Sobic001G194200 Sobic002G146300 Sobic002G146300 Sobic004G356700--Sobic002G146300 Sobic004G356700--Sobic004G001500 Sobic009G256400 Sobic009G256400 Sobic004G356700--Sobic009G256400 Sobic004G356700--Sobic004G244900 Sobic004G356700--Sobic003G155100 Sobic004G356700--Sobic006G219600 Sobic004G334300 Sobic004G334300 Sobic004G356700--Sobic004G334300 Sobic001G394800 Sobic001G394800 Sobic003G057233--Sobic001G394800 Sobic001G169900 Sobic001G169900 Sobic003G057233--Sobic001G169900 Sobic001G198100 Sobic001G198100 Sobic003G057233--Sobic001G198100 Sobic003G017100 Sobic003G017100 Sobic003G057233--Sobic003G017100 Sobic004G258700 Sobic004G258700 Sobic003G057233--Sobic004G258700 Sobic010G248700 Sobic010G248700 Sobic003G057233--Sobic010G248700 Sobic003G057233--Sobic010G132600 Sobic010G002700 Sobic010G002700 Sobic003G057233--Sobic010G002700 Sobic006G219150 Sobic006G219150 Sobic003G057233--Sobic006G219150 Sobic003G398700--Sobic002G257750 Sobic001G456900 Sobic001G456900 Sobic003G398700--Sobic001G456900 Sobic008G044100 Sobic008G044100 Sobic003G398700--Sobic008G044100 Sobic010G021500 Sobic010G021500 Sobic003G398700--Sobic010G021500 Sobic007G136800 Sobic007G136800 Sobic003G398700--Sobic007G136800 Sobic004G185800 Sobic004G185800 Sobic003G398700--Sobic004G185800 Sobic003G168100 Sobic003G168100 Sobic003G398700--Sobic003G168100 Sobic008G113100 Sobic008G113100 Sobic003G398700--Sobic008G113100 Sobic010G126000 Sobic010G126000 Sobic003G398700--Sobic010G126000 Sobic003G029500--Sobic005G201000 Sobic003G029500--Sobic005G132000 Sobic006G051800 Sobic006G051800 Sobic003G029500--Sobic006G051800 Sobic003G029500--Sobic009G040400 Sobic003G029500--Sobic003G003450 Sobic003G029500--Sobic004G312600 Sobic010G092350 Sobic010G092350 Sobic003G029500--Sobic010G092350 Sobic003G029500--Sobic005G106600 Sobic003G029500--Sobic003G220100 Sobic004G231900--Sobic006G219600 Sobic004G231900--Sobic006G051800 Sobic009G074400 Sobic009G074400 Sobic004G231900--Sobic009G074400 Sobic004G231900--Sobic004G146600 Sobic008G167600 Sobic008G167600 Sobic004G231900--Sobic008G167600 Sobic004G231900--Sobic004G001500 Sobic001G446850 Sobic001G446850 Sobic004G231900--Sobic001G446850 Sobic004G189200 Sobic004G189200 Sobic004G231900--Sobic004G189200 Sobic004G231900--Sobic004G312600
Octagon: transcription factors


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