Gene annotation
Transcriptome id Sobic.004G231900.1
Synonym Sb04g027560
Functional annotation ribonuclease protein, putative, expressed
UniProt A0A1Z5RPM6
Pfam PF00773
Panther DB PTHR23355 PTHR23355:SF9
NCBI CDD KOG2102; Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3
KEGG Orthology K18758; DIS3-like exonuclease 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G77680 : Ribonuclease II/R family protein
RAP-DB (Rice) LOC_Os02g51780.1 : ribonuclease protein, putative, expressed
MaizeGDB (Corn) Zm00025a033162
Brachypodium KQK01842 , KQK01843
Barley HORVU6Hr1G078320.2 , HORVU6Hr1G078320.3 , HORVU6Hr1G078320.1
Wheat TraesCS6B02G349400 , TraesCS6A02G319200 , TraesCS6D02G298400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
2 Sobic.006G051800 calmodulin-binding transcription activator 4, putative, expressed -
3 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
4 Sobic.004G146600 lipase, putative, expressed -
5 Sobic.008G167600 VTC2, putative, expressed -
6 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
7 Sobic.001G446850 - -
8 Sobic.004G189200 OsFBK9 - F-box domain and kelch repeat containing protein, expressed -
9 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
10 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
11 Sobic.010G132600 selenoprotein O, putative, expressed -
12 Sobic.007G190000 expressed protein -
13 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
14 Sobic.006G257800 actin-6, putative, expressed K16616: actin-related protein 8, plant
15 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6
16 Sobic.002G383600 zinc finger, C3HC4 type domain containing protein, expressed K12169: KPC1, Kip1 ubiquitination-promoting complex protein 1
17 Sobic.003G029500 zinc finger, C3HC4 type family protein, expressed -
18 Sobic.004G006800 expressed protein -
19 Sobic.010G020800 aminotransferase, classes I and II, domain containing protein, expressed K14270: aminotransferase
20 Sobic.003G186900 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2


Gene co-expression network
sample Sobic004G231900 Sobic004G231900 Sobic006G219600 Sobic006G219600 Sobic004G231900--Sobic006G219600 Sobic006G051800 Sobic006G051800 Sobic004G231900--Sobic006G051800 Sobic009G074400 Sobic009G074400 Sobic004G231900--Sobic009G074400 Sobic004G146600 Sobic004G146600 Sobic004G231900--Sobic004G146600 Sobic008G167600 Sobic008G167600 Sobic004G231900--Sobic008G167600 Sobic004G001500 Sobic004G001500 Sobic004G231900--Sobic004G001500 Sobic001G446850 Sobic001G446850 Sobic004G231900--Sobic001G446850 Sobic004G189200 Sobic004G189200 Sobic004G231900--Sobic004G189200 Sobic004G312600 Sobic004G312600 Sobic004G231900--Sobic004G312600 Sobic003G155100 Sobic003G155100 Sobic006G219600--Sobic003G155100 Sobic009G201300 Sobic009G201300 Sobic006G219600--Sobic009G201300 Sobic002G124600 Sobic002G124600 Sobic006G219600--Sobic002G124600 Sobic006G050700 Sobic006G050700 Sobic006G219600--Sobic006G050700 Sobic001G298900 Sobic001G298900 Sobic006G219600--Sobic001G298900 Sobic006G133900 Sobic006G133900 Sobic006G219600--Sobic006G133900 Sobic001G133000 Sobic001G133000 Sobic006G219600--Sobic001G133000 Sobic005G106600 Sobic005G106600 Sobic006G219600--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic006G219600--Sobic005G084500 Sobic003G029500 Sobic003G029500 Sobic006G051800--Sobic003G029500 Sobic006G051800--Sobic009G074400 Sobic006G051800--Sobic004G231900 Sobic002G383600 Sobic002G383600 Sobic006G051800--Sobic002G383600 Sobic006G051800--Sobic006G219600 Sobic006G051800--Sobic004G189200 Sobic006G257800 Sobic006G257800 Sobic006G051800--Sobic006G257800 Sobic005G201000 Sobic005G201000 Sobic006G051800--Sobic005G201000 Sobic006G051800--Sobic008G167600 Sobic003G316500 Sobic003G316500 Sobic009G074400--Sobic003G316500 Sobic001G534700 Sobic001G534700 Sobic009G074400--Sobic001G534700 Sobic009G074400--Sobic003G155100 Sobic003G198800 Sobic003G198800 Sobic009G074400--Sobic003G198800 Sobic002G311100 Sobic002G311100 Sobic009G074400--Sobic002G311100 Sobic009G074400--Sobic006G051800 Sobic009G074400--Sobic006G219600 Sobic008G001200 Sobic008G001200 Sobic009G074400--Sobic008G001200 Sobic009G074400--Sobic004G001500 Sobic001G230000 Sobic001G230000 Sobic004G146600--Sobic001G230000 Sobic004G146600--Sobic001G298900 Sobic004G146600--Sobic004G001500 Sobic004G146600--Sobic006G219600 Sobic002G043800 Sobic002G043800 Sobic004G146600--Sobic002G043800 Sobic004G143475 Sobic004G143475 Sobic004G146600--Sobic004G143475 Sobic010G132600 Sobic010G132600 Sobic004G146600--Sobic010G132600 Sobic004G146600--Sobic003G155100 Sobic003G043200 Sobic003G043200 Sobic004G146600--Sobic003G043200 Sobic008G167600--Sobic006G257800 Sobic004G151300 Sobic004G151300 Sobic008G167600--Sobic004G151300 Sobic002G291800 Sobic002G291800 Sobic008G167600--Sobic002G291800 Sobic008G167600--Sobic004G312600 Sobic004G127800 Sobic004G127800 Sobic008G167600--Sobic004G127800 Sobic002G293500 Sobic002G293500 Sobic008G167600--Sobic002G293500 Sobic002G081400 Sobic002G081400 Sobic008G167600--Sobic002G081400 Sobic006G090100 Sobic006G090100 Sobic008G167600--Sobic006G090100 Sobic001G333800 Sobic001G333800 Sobic008G167600--Sobic001G333800 Sobic002G146300 Sobic002G146300 Sobic004G001500--Sobic002G146300 Sobic004G001500--Sobic003G043200 Sobic005G187300 Sobic005G187300 Sobic004G001500--Sobic005G187300 Sobic001G370900 Sobic001G370900 Sobic004G001500--Sobic001G370900 Sobic001G457800 Sobic001G457800 Sobic004G001500--Sobic001G457800 Sobic009G256400 Sobic009G256400 Sobic004G001500--Sobic009G256400 Sobic003G166750 Sobic003G166750 Sobic004G001500--Sobic003G166750 Sobic004G356700 Sobic004G356700 Sobic004G001500--Sobic004G356700 Sobic001G527800 Sobic001G527800 Sobic004G001500--Sobic001G527800 Sobic001G446850--Sobic004G231900 Sobic001G446850--Sobic003G316500 Sobic001G446850--Sobic004G001500 Sobic001G446850--Sobic002G146300 Sobic010G020800 Sobic010G020800 Sobic001G446850--Sobic010G020800 Sobic007G190000 Sobic007G190000 Sobic001G446850--Sobic007G190000 Sobic001G446850--Sobic002G311100 Sobic001G446850--Sobic009G201300 Sobic001G446850--Sobic009G074400 Sobic004G189200--Sobic006G257800 Sobic001G062300 Sobic001G062300 Sobic004G189200--Sobic001G062300 Sobic004G189200--Sobic006G051800 Sobic004G189200--Sobic008G167600 Sobic004G189200--Sobic007G190000 Sobic004G189200--Sobic004G231900 Sobic003G301500 Sobic003G301500 Sobic004G189200--Sobic003G301500 Sobic004G189200--Sobic002G383600 Sobic004G179300 Sobic004G179300 Sobic004G189200--Sobic004G179300 Sobic007G227100 Sobic007G227100 Sobic004G312600--Sobic007G227100 Sobic004G312600--Sobic004G127800 Sobic008G038500 Sobic008G038500 Sobic004G312600--Sobic008G038500 Sobic001G331600 Sobic001G331600 Sobic004G312600--Sobic001G331600 Sobic002G382700 Sobic002G382700 Sobic004G312600--Sobic002G382700 Sobic004G312600--Sobic002G293500 Sobic001G077300 Sobic001G077300 Sobic004G312600--Sobic001G077300 Sobic004G312600--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic004G312600--Sobic003G220100
Octagon: transcription factors


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