Gene annotation
Transcriptome id Sobic.002G383600.1,Sobic.002G383600.2
Synonym RKP
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6QFR7 , A0A1B6QFT2
Pfam PF00622 PF10408 PF13920 PF00622
Panther DB PTHR13363 PTHR13363:SF1
NCBI CDD KOG4692; Predicted E3 ubiquitin ligase
KEGG Orthology K12169; KPC1, Kip1 ubiquitination-promoting complex protein 1
Gene Ontology GO:0016567; protein ubiquitination GO:0006511ubiquitin-dependent protein catabolic process GO:0000151ubiquitin ligase complex GO:0005515protein binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G22010 : related to KPC1
RAP-DB (Rice) LOC_Os07g43380.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048826
Brachypodium -
Barley -
Wheat -
Populus PNT35607 , PNT35608 , PNT35609 , PNT35612 , PNT35611 , PNT35610


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cDNA sequences
Sobic.002G383600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G257800 actin-6, putative, expressed K16616: actin-related protein 8, plant
2 Sobic.010G227100 BTB/POZ domain containing protein, putative, expressed -
3 Sobic.006G051800 calmodulin-binding transcription activator 4, putative, expressed -
4 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
5 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
6 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6
7 Sobic.004G189200 OsFBK9 - F-box domain and kelch repeat containing protein, expressed -
8 Sobic.006G275100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15119: solute carrier family 25, member 39/40
9 Sobic.007G190000 expressed protein -
10 Sobic.002G370200 agenet domain-containing protein, putative, expressed -
11 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
12 Sobic.007G146400 chaperonin Cpn60/TCP-1, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
13 Sobic.004G231900 ribonuclease protein, putative, expressed K18758: DIS3-like exonuclease 2
14 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
16 Sobic.005G187300 lipin, N-terminal conserved region family protein, expressed K15728: phosphatidate phosphatase LPIN
17 Sobic.003G316500 expressed protein -
18 Sobic.003G309200 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
19 Sobic.008G167600 VTC2, putative, expressed -
20 Sobic.002G243800 BPI/LBP family protein At3g20270 precursor, putative, expressed -


Gene co-expression network
sample Sobic002G383600 Sobic002G383600 Sobic006G257800 Sobic006G257800 Sobic002G383600--Sobic006G257800 Sobic010G227100 Sobic010G227100 Sobic002G383600--Sobic010G227100 Sobic006G051800 Sobic006G051800 Sobic002G383600--Sobic006G051800 Sobic009G074400 Sobic009G074400 Sobic002G383600--Sobic009G074400 Sobic004G001500 Sobic004G001500 Sobic002G383600--Sobic004G001500 Sobic003G107500 Sobic003G107500 Sobic002G383600--Sobic003G107500 Sobic004G189200 Sobic004G189200 Sobic002G383600--Sobic004G189200 Sobic006G275100 Sobic006G275100 Sobic002G383600--Sobic006G275100 Sobic007G190000 Sobic007G190000 Sobic002G383600--Sobic007G190000 Sobic008G167600 Sobic008G167600 Sobic006G257800--Sobic008G167600 Sobic006G257800--Sobic004G189200 Sobic003G198800 Sobic003G198800 Sobic006G257800--Sobic003G198800 Sobic006G257800--Sobic002G383600 Sobic001G062300 Sobic001G062300 Sobic006G257800--Sobic001G062300 Sobic010G177400 Sobic010G177400 Sobic006G257800--Sobic010G177400 Sobic002G295100 Sobic002G295100 Sobic006G257800--Sobic002G295100 Sobic006G257800--Sobic006G051800 Sobic002G341000 Sobic002G341000 Sobic006G257800--Sobic002G341000 Sobic002G243800 Sobic002G243800 Sobic010G227100--Sobic002G243800 Sobic010G227100--Sobic002G383600 Sobic003G372500 Sobic003G372500 Sobic010G227100--Sobic003G372500 Sobic010G227100--Sobic006G275100 Sobic010G227100--Sobic007G190000 Sobic007G075400 Sobic007G075400 Sobic010G227100--Sobic007G075400 Sobic002G146300 Sobic002G146300 Sobic010G227100--Sobic002G146300 Sobic010G227100--Sobic009G074400 Sobic009G053900 Sobic009G053900 Sobic010G227100--Sobic009G053900 Sobic003G029500 Sobic003G029500 Sobic006G051800--Sobic003G029500 Sobic006G051800--Sobic009G074400 Sobic004G231900 Sobic004G231900 Sobic006G051800--Sobic004G231900 Sobic006G051800--Sobic002G383600 Sobic006G219600 Sobic006G219600 Sobic006G051800--Sobic006G219600 Sobic006G051800--Sobic004G189200 Sobic006G051800--Sobic006G257800 Sobic005G201000 Sobic005G201000 Sobic006G051800--Sobic005G201000 Sobic006G051800--Sobic008G167600 Sobic003G316500 Sobic003G316500 Sobic009G074400--Sobic003G316500 Sobic001G534700 Sobic001G534700 Sobic009G074400--Sobic001G534700 Sobic003G155100 Sobic003G155100 Sobic009G074400--Sobic003G155100 Sobic009G074400--Sobic003G198800 Sobic002G311100 Sobic002G311100 Sobic009G074400--Sobic002G311100 Sobic009G074400--Sobic006G051800 Sobic009G074400--Sobic006G219600 Sobic008G001200 Sobic008G001200 Sobic009G074400--Sobic008G001200 Sobic009G074400--Sobic004G001500 Sobic004G001500--Sobic002G146300 Sobic003G043200 Sobic003G043200 Sobic004G001500--Sobic003G043200 Sobic005G187300 Sobic005G187300 Sobic004G001500--Sobic005G187300 Sobic001G370900 Sobic001G370900 Sobic004G001500--Sobic001G370900 Sobic001G457800 Sobic001G457800 Sobic004G001500--Sobic001G457800 Sobic009G256400 Sobic009G256400 Sobic004G001500--Sobic009G256400 Sobic003G166750 Sobic003G166750 Sobic004G001500--Sobic003G166750 Sobic004G356700 Sobic004G356700 Sobic004G001500--Sobic004G356700 Sobic001G527800 Sobic001G527800 Sobic004G001500--Sobic001G527800 Sobic003G107500--Sobic004G001500 Sobic002G043800 Sobic002G043800 Sobic003G107500--Sobic002G043800 Sobic003G107500--Sobic002G383600 Sobic001G310100 Sobic001G310100 Sobic003G107500--Sobic001G310100 Sobic004G146600 Sobic004G146600 Sobic003G107500--Sobic004G146600 Sobic003G298200 Sobic003G298200 Sobic003G107500--Sobic003G298200 Sobic003G373500 Sobic003G373500 Sobic003G107500--Sobic003G373500 Sobic003G107500--Sobic005G187300 Sobic010G014100 Sobic010G014100 Sobic003G107500--Sobic010G014100 Sobic004G189200--Sobic006G257800 Sobic004G189200--Sobic001G062300 Sobic004G189200--Sobic006G051800 Sobic004G189200--Sobic008G167600 Sobic004G189200--Sobic007G190000 Sobic004G189200--Sobic004G231900 Sobic003G301500 Sobic003G301500 Sobic004G189200--Sobic003G301500 Sobic004G189200--Sobic002G383600 Sobic004G179300 Sobic004G179300 Sobic004G189200--Sobic004G179300 Sobic006G275100--Sobic010G227100 Sobic006G275100--Sobic006G257800 Sobic006G275100--Sobic001G062300 Sobic006G275100--Sobic002G383600 Sobic006G275100--Sobic004G189200 Sobic006G275100--Sobic003G372500 Sobic006G275100--Sobic003G198800 Sobic001G481900 Sobic001G481900 Sobic006G275100--Sobic001G481900 Sobic001G214100 Sobic001G214100 Sobic006G275100--Sobic001G214100 Sobic010G074300 Sobic010G074300 Sobic007G190000--Sobic010G074300 Sobic007G190000--Sobic004G179300 Sobic007G190000--Sobic003G372500 Sobic007G190000--Sobic010G227100 Sobic007G190000--Sobic002G146300 Sobic010G020800 Sobic010G020800 Sobic007G190000--Sobic010G020800 Sobic007G190000--Sobic009G074400 Sobic010G147100 Sobic010G147100 Sobic007G190000--Sobic010G147100 Sobic007G190000--Sobic004G189200
Octagon: transcription factors


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