Gene annotation
Transcriptome id Sobic.008G167600.3,Sobic.008G167600.2,Sobic.008G167600.1,Sobic.008G167600.4
Synonym Sb08g021310, VTC5
Functional annotation VTC2, putative, expressed
UniProt A0A1B6PE71 , A0A1B6PE74 , A0A1B6PEM5 , A0A1Z5R822
Pfam -
Panther DB PTHR20884:SF9 PTHR20884 PTHR20884 PTHR20884:SF9
NCBI CDD KOG2720; Predicted hydrolase (HIT family)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G55120 : mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase,galactose-1-phosphate guanylyltransferase (GDP)s;GDP-D-glucose phosphorylases;quercetin 4\'-O-glucosyltransferases
RAP-DB (Rice) LOC_Os12g41800.1 : VTC2, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU5Hr1G011170.1 , HORVU5Hr1G011170.3 , HORVU5Hr1G011170.4
Wheat TraesCS5A02G046100 , TraesCS5A02G046100 , TraesCS5D02G056000 , TraesCS5B02G050200 , TraesCS5D02G056000
Populus -


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cDNA sequences
Sobic.008G167600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G257800 actin-6, putative, expressed K16616: actin-related protein 8, plant
2 Sobic.004G151300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF803 domain containing, putative, expressed -
3 Sobic.002G291800 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
4 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
5 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
6 Sobic.002G293500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sialin, putative, expressed -
7 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
8 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
9 Sobic.001G333800 MYB family transcription factor, putative, expressed -
10 Sobic.010G150100 expressed protein -
11 Sobic.002G043800 regulator of chromosome condensation/beta-lactamase-inhibitor protein II, putative, expressed -
12 Sobic.004G189200 OsFBK9 - F-box domain and kelch repeat containing protein, expressed -
13 Sobic.010G223200 OsFtsH2 FtsH protease, homologue of AtFtsH2/8, expressed K03798: ftsH, cell division protease FtsH
14 Sobic.002G060800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf45, putative, expressed -
15 Sobic.010G131700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsCttP3 - Putative C-terminal processing peptidase homologue, expressed -
16 Sobic.004G231900 ribonuclease protein, putative, expressed K18758: DIS3-like exonuclease 2
17 Sobic.004G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
18 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.006G259600 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
20 Sobic.002G341000 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -


Gene co-expression network
sample Sobic008G167600 Sobic008G167600 Sobic006G257800 Sobic006G257800 Sobic008G167600--Sobic006G257800 Sobic004G151300 Sobic004G151300 Sobic008G167600--Sobic004G151300 Sobic002G291800 Sobic002G291800 Sobic008G167600--Sobic002G291800 Sobic004G312600 Sobic004G312600 Sobic008G167600--Sobic004G312600 Sobic004G127800 Sobic004G127800 Sobic008G167600--Sobic004G127800 Sobic002G293500 Sobic002G293500 Sobic008G167600--Sobic002G293500 Sobic002G081400 Sobic002G081400 Sobic008G167600--Sobic002G081400 Sobic006G090100 Sobic006G090100 Sobic008G167600--Sobic006G090100 Sobic001G333800 Sobic001G333800 Sobic008G167600--Sobic001G333800 Sobic006G257800--Sobic008G167600 Sobic004G189200 Sobic004G189200 Sobic006G257800--Sobic004G189200 Sobic003G198800 Sobic003G198800 Sobic006G257800--Sobic003G198800 Sobic002G383600 Sobic002G383600 Sobic006G257800--Sobic002G383600 Sobic001G062300 Sobic001G062300 Sobic006G257800--Sobic001G062300 Sobic010G177400 Sobic010G177400 Sobic006G257800--Sobic010G177400 Sobic002G295100 Sobic002G295100 Sobic006G257800--Sobic002G295100 Sobic006G051800 Sobic006G051800 Sobic006G257800--Sobic006G051800 Sobic002G341000 Sobic002G341000 Sobic006G257800--Sobic002G341000 Sobic010G150100 Sobic010G150100 Sobic004G151300--Sobic010G150100 Sobic004G151300--Sobic008G167600 Sobic001G345100 Sobic001G345100 Sobic004G151300--Sobic001G345100 Sobic004G151300--Sobic006G090100 Sobic004G151300--Sobic004G312600 Sobic001G207800 Sobic001G207800 Sobic004G151300--Sobic001G207800 Sobic001G331600 Sobic001G331600 Sobic004G151300--Sobic001G331600 Sobic002G382700 Sobic002G382700 Sobic004G151300--Sobic002G382700 Sobic007G227100 Sobic007G227100 Sobic004G151300--Sobic007G227100 Sobic010G223200 Sobic010G223200 Sobic002G291800--Sobic010G223200 Sobic002G291800--Sobic008G167600 Sobic003G162400 Sobic003G162400 Sobic002G291800--Sobic003G162400 Sobic006G235300 Sobic006G235300 Sobic002G291800--Sobic006G235300 Sobic003G440300 Sobic003G440300 Sobic002G291800--Sobic003G440300 Sobic002G291800--Sobic004G127800 Sobic004G190100 Sobic004G190100 Sobic002G291800--Sobic004G190100 Sobic002G275100 Sobic002G275100 Sobic002G291800--Sobic002G275100 Sobic001G112900 Sobic001G112900 Sobic002G291800--Sobic001G112900 Sobic004G312600--Sobic007G227100 Sobic004G312600--Sobic004G127800 Sobic008G038500 Sobic008G038500 Sobic004G312600--Sobic008G038500 Sobic004G312600--Sobic001G331600 Sobic004G312600--Sobic002G382700 Sobic004G312600--Sobic002G293500 Sobic001G077300 Sobic001G077300 Sobic004G312600--Sobic001G077300 Sobic005G106600 Sobic005G106600 Sobic004G312600--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic004G312600--Sobic003G220100 Sobic004G127800--Sobic007G227100 Sobic004G127800--Sobic001G077300 Sobic004G127800--Sobic006G235300 Sobic004G127800--Sobic004G312600 Sobic006G235400 Sobic006G235400 Sobic004G127800--Sobic006G235400 Sobic004G127800--Sobic006G090100 Sobic004G127800--Sobic001G331600 Sobic006G191500 Sobic006G191500 Sobic004G127800--Sobic006G191500 Sobic009G073900 Sobic009G073900 Sobic004G127800--Sobic009G073900 Sobic004G153900 Sobic004G153900 Sobic002G293500--Sobic004G153900 Sobic001G046000 Sobic001G046000 Sobic002G293500--Sobic001G046000 Sobic002G161400 Sobic002G161400 Sobic002G293500--Sobic002G161400 Sobic002G293500--Sobic001G331600 Sobic002G293500--Sobic004G312600 Sobic002G293500--Sobic004G127800 Sobic002G293500--Sobic007G227100 Sobic010G131700 Sobic010G131700 Sobic002G293500--Sobic010G131700 Sobic001G485100 Sobic001G485100 Sobic002G293500--Sobic001G485100 Sobic004G317700 Sobic004G317700 Sobic002G081400--Sobic004G317700 Sobic004G271600 Sobic004G271600 Sobic002G081400--Sobic004G271600 Sobic002G081400--Sobic009G073900 Sobic002G081400--Sobic001G077300 Sobic003G003450 Sobic003G003450 Sobic002G081400--Sobic003G003450 Sobic002G081400--Sobic006G090100 Sobic001G509200 Sobic001G509200 Sobic002G081400--Sobic001G509200 Sobic007G124500 Sobic007G124500 Sobic002G081400--Sobic007G124500 Sobic009G170200 Sobic009G170200 Sobic002G081400--Sobic009G170200 Sobic006G090100--Sobic001G207800 Sobic001G283100 Sobic001G283100 Sobic006G090100--Sobic001G283100 Sobic006G090100--Sobic001G077300 Sobic006G090100--Sobic001G509200 Sobic006G090100--Sobic009G073900 Sobic006G090100--Sobic002G382700 Sobic003G341300 Sobic003G341300 Sobic006G090100--Sobic003G341300 Sobic006G090100--Sobic001G046000 Sobic006G090100--Sobic002G081400 Sobic001G359300 Sobic001G359300 Sobic001G333800--Sobic001G359300 Sobic001G333800--Sobic005G106600 Sobic009G093100 Sobic009G093100 Sobic001G333800--Sobic009G093100 Sobic001G333800--Sobic006G090100 Sobic001G303200 Sobic001G303200 Sobic001G333800--Sobic001G303200 Sobic001G333800--Sobic003G220100 Sobic009G038900 Sobic009G038900 Sobic001G333800--Sobic009G038900 Sobic001G333800--Sobic009G073900 Sobic001G333800--Sobic001G077300
Octagon: transcription factors


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