Gene annotation
Transcriptome id Sobic.002G293500.5,Sobic.002G293500.2,Sobic.002G293500.1,Sobic.002G293500.10,Sobic.002G293500.8,Sobic.002G293500.6,Sobic.002G293500.12,Sobic.002G293500.3,Sobic.002G293500.7,Sobic.002G293500.11,Sobic.002G293500.4,Sobic.002G293500.9
Synonym PHT4, Sb02g032440, 5
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
sialin, putative, expressed
UniProt A0A1W0W677 , A0A1W0W686 , A0A1W0W693 , A0A1W0W6E3 , A0A1W0W697 , A0A1W0W6B1 , A0A1W0W6B8 , A0A1B6QE23 , A0A1W0W6D6 , A0A1W0W6D3
Pfam PF00083 PF07690
Panther DB PTHR11662 PTHR11662:SF243
NCBI CDD KOG2532; Permease of the major facilitator superfamily
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G20380 : phosphate transporter 4;5
RAP-DB (Rice) LOC_Os09g38410.1,LOC_Os09g39680.1,LOC_Os01g17240.1 : transporter, major facilitator family, putative, expressed,sialin, putative, expressed
MaizeGDB (Corn) Zm00025a047922
Brachypodium -
Barley -
Wheat TraesCS5B02G359800 , TraesCS5A02G357300 , TraesCS5D02G366400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G153900 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
2 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
4 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
5 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
6 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
7 Sobic.007G227100 expressed protein -
8 Sobic.010G131700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsCttP3 - Putative C-terminal processing peptidase homologue, expressed -
9 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.002G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@integral membrane transporter family protein, putative, expressed -
11 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III
12 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
13 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
14 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
15 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
16 Sobic.006G235300 expressed protein -
17 Sobic.010G104700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
18 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
19 Sobic.003G162400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.004G151300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF803 domain containing, putative, expressed -


Gene co-expression network
sample Sobic002G293500 Sobic002G293500 Sobic004G153900 Sobic004G153900 Sobic002G293500--Sobic004G153900 Sobic001G046000 Sobic001G046000 Sobic002G293500--Sobic001G046000 Sobic002G161400 Sobic002G161400 Sobic002G293500--Sobic002G161400 Sobic001G331600 Sobic001G331600 Sobic002G293500--Sobic001G331600 Sobic004G312600 Sobic004G312600 Sobic002G293500--Sobic004G312600 Sobic004G127800 Sobic004G127800 Sobic002G293500--Sobic004G127800 Sobic007G227100 Sobic007G227100 Sobic002G293500--Sobic007G227100 Sobic010G131700 Sobic010G131700 Sobic002G293500--Sobic010G131700 Sobic001G485100 Sobic001G485100 Sobic002G293500--Sobic001G485100 Sobic004G128900 Sobic004G128900 Sobic004G153900--Sobic004G128900 Sobic004G153900--Sobic002G161400 Sobic010G104700 Sobic010G104700 Sobic004G153900--Sobic010G104700 Sobic004G153900--Sobic001G046000 Sobic004G153900--Sobic001G331600 Sobic006G191500 Sobic006G191500 Sobic004G153900--Sobic006G191500 Sobic004G153900--Sobic001G485100 Sobic008G149100 Sobic008G149100 Sobic004G153900--Sobic008G149100 Sobic004G344600 Sobic004G344600 Sobic004G153900--Sobic004G344600 Sobic009G225600 Sobic009G225600 Sobic001G046000--Sobic009G225600 Sobic001G046000--Sobic001G485100 Sobic001G046000--Sobic010G104700 Sobic002G047400 Sobic002G047400 Sobic001G046000--Sobic002G047400 Sobic003G186800 Sobic003G186800 Sobic001G046000--Sobic003G186800 Sobic010G101000 Sobic010G101000 Sobic001G046000--Sobic010G101000 Sobic006G090100 Sobic006G090100 Sobic001G046000--Sobic006G090100 Sobic001G046000--Sobic004G153900 Sobic001G046000--Sobic006G191500 Sobic002G161400--Sobic006G191500 Sobic002G161400--Sobic004G344600 Sobic002G161400--Sobic004G128900 Sobic003G304300 Sobic003G304300 Sobic002G161400--Sobic003G304300 Sobic002G161400--Sobic001G485100 Sobic002G161400--Sobic004G153900 Sobic003G339200 Sobic003G339200 Sobic002G161400--Sobic003G339200 Sobic003G380200 Sobic003G380200 Sobic002G161400--Sobic003G380200 Sobic001G112900 Sobic001G112900 Sobic002G161400--Sobic001G112900 Sobic001G331600--Sobic001G485100 Sobic001G331600--Sobic004G128900 Sobic001G331600--Sobic004G153900 Sobic001G331600--Sobic002G161400 Sobic001G331600--Sobic001G046000 Sobic001G331600--Sobic004G312600 Sobic001G331600--Sobic007G227100 Sobic001G331600--Sobic006G191500 Sobic001G331600--Sobic004G344600 Sobic004G312600--Sobic007G227100 Sobic004G312600--Sobic004G127800 Sobic008G038500 Sobic008G038500 Sobic004G312600--Sobic008G038500 Sobic004G312600--Sobic001G331600 Sobic002G382700 Sobic002G382700 Sobic004G312600--Sobic002G382700 Sobic004G312600--Sobic002G293500 Sobic001G077300 Sobic001G077300 Sobic004G312600--Sobic001G077300 Sobic005G106600 Sobic005G106600 Sobic004G312600--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic004G312600--Sobic003G220100 Sobic004G127800--Sobic007G227100 Sobic004G127800--Sobic001G077300 Sobic006G235300 Sobic006G235300 Sobic004G127800--Sobic006G235300 Sobic004G127800--Sobic004G312600 Sobic006G235400 Sobic006G235400 Sobic004G127800--Sobic006G235400 Sobic004G127800--Sobic006G090100 Sobic004G127800--Sobic001G331600 Sobic004G127800--Sobic006G191500 Sobic009G073900 Sobic009G073900 Sobic004G127800--Sobic009G073900 Sobic007G227100--Sobic004G312600 Sobic007G227100--Sobic004G127800 Sobic007G227100--Sobic001G077300 Sobic007G227100--Sobic001G331600 Sobic007G227100--Sobic008G038500 Sobic007G227100--Sobic002G382700 Sobic007G227100--Sobic006G235400 Sobic003G341300 Sobic003G341300 Sobic007G227100--Sobic003G341300 Sobic007G227100--Sobic001G485100 Sobic010G131700--Sobic002G293500 Sobic010G131700--Sobic004G127800 Sobic005G095000 Sobic005G095000 Sobic010G131700--Sobic005G095000 Sobic010G131700--Sobic008G038500 Sobic002G119100 Sobic002G119100 Sobic010G131700--Sobic002G119100 Sobic010G131700--Sobic006G090100 Sobic001G359300 Sobic001G359300 Sobic010G131700--Sobic001G359300 Sobic010G131700--Sobic007G227100 Sobic009G194500 Sobic009G194500 Sobic010G131700--Sobic009G194500 Sobic001G485100--Sobic006G191500 Sobic001G485100--Sobic002G161400 Sobic001G485100--Sobic003G380200 Sobic001G485100--Sobic003G186800 Sobic001G485100--Sobic001G046000 Sobic001G485100--Sobic001G331600 Sobic003G228300 Sobic003G228300 Sobic001G485100--Sobic003G228300 Sobic001G485100--Sobic009G225600 Sobic001G485100--Sobic004G344600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.