Gene annotation
Transcriptome id Sobic.004G344600.1
Synonym Sb04g037180
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ELMO/CED-12 family protein, putative, expressed
UniProt C5XVW1
Pfam PF03109
Panther DB PTHR10566 PTHR10566:SF86
NCBI CDD KOG1235; Predicted unusual protein kinase
KEGG Orthology K08869; ADCK, aarF domain-containing kinase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G24190 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os02g57160.1 : ELMO/CED-12 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a032807
Brachypodium KQK01348
Barley HORVU6Hr1G090700.4 , HORVU6Hr1G090700.2 , HORVU6Hr1G090700.3 , HORVU6Hr1G090700.1 , HORVU6Hr1G090700.5
Wheat TraesCS6B02G430000 , TraesCS6B02G430000 , TraesCS6A02G389300 , TraesCS6D02G374200
Populus -


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cDNA sequences
Sobic.004G344600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
2 Sobic.001G112900 expressed protein -
3 Sobic.003G339200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.003G304300 expressed protein -
5 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
6 Sobic.010G104700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
7 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
9 Sobic.009G246400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polyprenyl synthetase, putative, expressed K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
10 Sobic.007G065600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carotenoid synthesis regulator CarF, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
11 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
12 Sobic.003G340300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nodulin, putative, expressed -
13 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
15 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
16 Sobic.004G153900 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
17 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
18 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
19 Sobic.003G162400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase


Gene co-expression network
sample Sobic004G344600 Sobic004G344600 Sobic002G161400 Sobic002G161400 Sobic004G344600--Sobic002G161400 Sobic001G112900 Sobic001G112900 Sobic004G344600--Sobic001G112900 Sobic003G339200 Sobic003G339200 Sobic004G344600--Sobic003G339200 Sobic003G304300 Sobic003G304300 Sobic004G344600--Sobic003G304300 Sobic006G191500 Sobic006G191500 Sobic004G344600--Sobic006G191500 Sobic010G104700 Sobic010G104700 Sobic004G344600--Sobic010G104700 Sobic001G485100 Sobic001G485100 Sobic004G344600--Sobic001G485100 Sobic004G128900 Sobic004G128900 Sobic004G344600--Sobic004G128900 Sobic009G246400 Sobic009G246400 Sobic004G344600--Sobic009G246400 Sobic002G161400--Sobic006G191500 Sobic002G161400--Sobic004G344600 Sobic002G161400--Sobic004G128900 Sobic002G161400--Sobic003G304300 Sobic002G161400--Sobic001G485100 Sobic004G153900 Sobic004G153900 Sobic002G161400--Sobic004G153900 Sobic002G161400--Sobic003G339200 Sobic003G380200 Sobic003G380200 Sobic002G161400--Sobic003G380200 Sobic002G161400--Sobic001G112900 Sobic001G112900--Sobic003G339200 Sobic001G112900--Sobic004G344600 Sobic001G112900--Sobic003G304300 Sobic001G112900--Sobic002G161400 Sobic010G113200 Sobic010G113200 Sobic001G112900--Sobic010G113200 Sobic005G002400 Sobic005G002400 Sobic001G112900--Sobic005G002400 Sobic001G112900--Sobic006G191500 Sobic003G162400 Sobic003G162400 Sobic001G112900--Sobic003G162400 Sobic001G112900--Sobic010G104700 Sobic003G339200--Sobic001G112900 Sobic003G339200--Sobic004G344600 Sobic003G339200--Sobic002G161400 Sobic003G339200--Sobic003G304300 Sobic003G339200--Sobic010G113200 Sobic003G339200--Sobic009G246400 Sobic003G339200--Sobic003G162400 Sobic003G339200--Sobic006G191500 Sobic003G339200--Sobic010G104700 Sobic004G267700 Sobic004G267700 Sobic003G304300--Sobic004G267700 Sobic003G304300--Sobic006G191500 Sobic002G351200 Sobic002G351200 Sobic003G304300--Sobic002G351200 Sobic003G304300--Sobic002G161400 Sobic003G304300--Sobic004G344600 Sobic003G304300--Sobic001G112900 Sobic003G186800 Sobic003G186800 Sobic003G304300--Sobic003G186800 Sobic003G304300--Sobic003G380200 Sobic004G268400 Sobic004G268400 Sobic003G304300--Sobic004G268400 Sobic006G191500--Sobic002G161400 Sobic006G191500--Sobic003G380200 Sobic006G191500--Sobic001G485100 Sobic006G191500--Sobic003G304300 Sobic006G191500--Sobic004G128900 Sobic006G191500--Sobic004G344600 Sobic006G191500--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic006G191500--Sobic010G100900 Sobic001G046000 Sobic001G046000 Sobic006G191500--Sobic001G046000 Sobic010G104700--Sobic001G046000 Sobic010G104700--Sobic003G304300 Sobic010G101000 Sobic010G101000 Sobic010G104700--Sobic010G101000 Sobic010G104700--Sobic004G344600 Sobic010G104700--Sobic004G153900 Sobic009G225600 Sobic009G225600 Sobic010G104700--Sobic009G225600 Sobic010G104700--Sobic002G161400 Sobic008G180800 Sobic008G180800 Sobic010G104700--Sobic008G180800 Sobic010G104700--Sobic002G351200 Sobic001G485100--Sobic006G191500 Sobic001G485100--Sobic002G161400 Sobic001G485100--Sobic003G380200 Sobic001G485100--Sobic003G186800 Sobic001G485100--Sobic001G046000 Sobic001G331600 Sobic001G331600 Sobic001G485100--Sobic001G331600 Sobic003G228300 Sobic003G228300 Sobic001G485100--Sobic003G228300 Sobic001G485100--Sobic009G225600 Sobic001G485100--Sobic004G344600 Sobic004G128900--Sobic002G161400 Sobic004G128900--Sobic004G153900 Sobic004G128900--Sobic006G191500 Sobic006G235400 Sobic006G235400 Sobic004G128900--Sobic006G235400 Sobic006G161500 Sobic006G161500 Sobic004G128900--Sobic006G161500 Sobic004G128900--Sobic004G344600 Sobic004G128900--Sobic003G380200 Sobic004G128900--Sobic001G331600 Sobic004G128900--Sobic001G485100 Sobic009G246400--Sobic002G161400 Sobic009G246400--Sobic004G344600 Sobic009G246400--Sobic003G304300 Sobic009G246400--Sobic003G339200 Sobic009G246400--Sobic004G128900 Sobic009G246400--Sobic001G112900 Sobic009G246400--Sobic006G191500 Sobic009G246400--Sobic010G113200 Sobic009G246400--Sobic010G100900
Octagon: transcription factors


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