Gene annotation
Transcriptome id Sobic.009G246400.1
Synonym SPS2, Sb09g029730
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
polyprenyl synthetase, putative, expressed
UniProt C5YWG7
Pfam PF00348
Panther DB PTHR12001 PTHR12001:SF18
NCBI CDD KOG0776; Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase
KEGG Orthology K05356; SPS, all-trans-nonaprenyl-diphosphate synthase
Gene Ontology GO:0008299; isoprenoid biosynthetic process GO:0016765transferase activity, transferring alkyl or aryl (other than methyl) groups GO:0015979photosynthesis


Orthologs (automatic annotation)
TAIR AT1G17050 : solanesyl diphosphate synthase 2
RAP-DB (Rice) LOC_Os05g50550.1 : polyprenyl synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a044720 , Zm00025a000679
Brachypodium KQJ91692 , KQK04692
Barley HORVU1Hr1G091880.1 , HORVU1Hr1G091880.3 , HORVU1Hr1G091880.2 , HORVU1Hr1G091880.5 , HORVU1Hr1G091880.7 , HORVU1Hr1G091880.6 , HORVU1Hr1G091880.4
Wheat TraesCS1A02G420900 , TraesCS1A02G420900 , TraesCS1B02G452100 , TraesCS1D02G428800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
2 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
3 Sobic.003G304300 expressed protein -
4 Sobic.003G339200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
6 Sobic.001G112900 expressed protein -
7 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
8 Sobic.010G113200 UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed -
9 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
10 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
11 Sobic.003G340300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nodulin, putative, expressed -
12 Sobic.010G104700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
13 Sobic.004G153900 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
14 Sobic.002G408000 KIP1, putative, expressed -
15 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
16 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
17 Sobic.007G016600 expressed protein -
18 Sobic.004G035100 UOS1, putative, expressed -
19 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
20 Sobic.006G235300 expressed protein -


Gene co-expression network
sample Sobic009G246400 Sobic009G246400 Sobic002G161400 Sobic002G161400 Sobic009G246400--Sobic002G161400 Sobic004G344600 Sobic004G344600 Sobic009G246400--Sobic004G344600 Sobic003G304300 Sobic003G304300 Sobic009G246400--Sobic003G304300 Sobic003G339200 Sobic003G339200 Sobic009G246400--Sobic003G339200 Sobic004G128900 Sobic004G128900 Sobic009G246400--Sobic004G128900 Sobic001G112900 Sobic001G112900 Sobic009G246400--Sobic001G112900 Sobic006G191500 Sobic006G191500 Sobic009G246400--Sobic006G191500 Sobic010G113200 Sobic010G113200 Sobic009G246400--Sobic010G113200 Sobic010G100900 Sobic010G100900 Sobic009G246400--Sobic010G100900 Sobic002G161400--Sobic006G191500 Sobic002G161400--Sobic004G344600 Sobic002G161400--Sobic004G128900 Sobic002G161400--Sobic003G304300 Sobic001G485100 Sobic001G485100 Sobic002G161400--Sobic001G485100 Sobic004G153900 Sobic004G153900 Sobic002G161400--Sobic004G153900 Sobic002G161400--Sobic003G339200 Sobic003G380200 Sobic003G380200 Sobic002G161400--Sobic003G380200 Sobic002G161400--Sobic001G112900 Sobic004G344600--Sobic002G161400 Sobic004G344600--Sobic001G112900 Sobic004G344600--Sobic003G339200 Sobic004G344600--Sobic003G304300 Sobic004G344600--Sobic006G191500 Sobic010G104700 Sobic010G104700 Sobic004G344600--Sobic010G104700 Sobic004G344600--Sobic001G485100 Sobic004G344600--Sobic004G128900 Sobic004G344600--Sobic009G246400 Sobic004G267700 Sobic004G267700 Sobic003G304300--Sobic004G267700 Sobic003G304300--Sobic006G191500 Sobic002G351200 Sobic002G351200 Sobic003G304300--Sobic002G351200 Sobic003G304300--Sobic002G161400 Sobic003G304300--Sobic004G344600 Sobic003G304300--Sobic001G112900 Sobic003G186800 Sobic003G186800 Sobic003G304300--Sobic003G186800 Sobic003G304300--Sobic003G380200 Sobic004G268400 Sobic004G268400 Sobic003G304300--Sobic004G268400 Sobic003G339200--Sobic001G112900 Sobic003G339200--Sobic004G344600 Sobic003G339200--Sobic002G161400 Sobic003G339200--Sobic003G304300 Sobic003G339200--Sobic010G113200 Sobic003G339200--Sobic009G246400 Sobic003G162400 Sobic003G162400 Sobic003G339200--Sobic003G162400 Sobic003G339200--Sobic006G191500 Sobic003G339200--Sobic010G104700 Sobic004G128900--Sobic002G161400 Sobic004G128900--Sobic004G153900 Sobic004G128900--Sobic006G191500 Sobic006G235400 Sobic006G235400 Sobic004G128900--Sobic006G235400 Sobic006G161500 Sobic006G161500 Sobic004G128900--Sobic006G161500 Sobic004G128900--Sobic004G344600 Sobic004G128900--Sobic003G380200 Sobic001G331600 Sobic001G331600 Sobic004G128900--Sobic001G331600 Sobic004G128900--Sobic001G485100 Sobic001G112900--Sobic003G339200 Sobic001G112900--Sobic004G344600 Sobic001G112900--Sobic003G304300 Sobic001G112900--Sobic002G161400 Sobic001G112900--Sobic010G113200 Sobic005G002400 Sobic005G002400 Sobic001G112900--Sobic005G002400 Sobic001G112900--Sobic006G191500 Sobic001G112900--Sobic003G162400 Sobic001G112900--Sobic010G104700 Sobic006G191500--Sobic002G161400 Sobic006G191500--Sobic003G380200 Sobic006G191500--Sobic001G485100 Sobic006G191500--Sobic003G304300 Sobic006G191500--Sobic004G128900 Sobic006G191500--Sobic004G344600 Sobic006G191500--Sobic003G186800 Sobic006G191500--Sobic010G100900 Sobic001G046000 Sobic001G046000 Sobic006G191500--Sobic001G046000 Sobic010G113200--Sobic001G112900 Sobic010G113200--Sobic003G339200 Sobic010G113200--Sobic003G304300 Sobic010G113200--Sobic009G246400 Sobic010G113200--Sobic005G002400 Sobic010G113200--Sobic002G161400 Sobic010G113200--Sobic002G351200 Sobic010G113200--Sobic004G344600 Sobic010G113200--Sobic003G162400 Sobic010G100900--Sobic002G351200 Sobic010G100900--Sobic003G380200 Sobic002G132400 Sobic002G132400 Sobic010G100900--Sobic002G132400 Sobic010G100900--Sobic004G268400 Sobic010G100900--Sobic003G304300 Sobic010G100900--Sobic004G267700 Sobic004G271600 Sobic004G271600 Sobic010G100900--Sobic004G271600 Sobic002G356900 Sobic002G356900 Sobic010G100900--Sobic002G356900 Sobic010G100900--Sobic004G128900
Octagon: transcription factors


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