Gene annotation
Transcriptome id Sobic.004G035100.1
Synonym Sb04g003040, HCF173
Functional annotation UOS1, putative, expressed
UniProt C5XTZ6
Pfam PF08547 PF05368 PF13460
Panther DB PTHR10366 PTHR10366:SF343
NCBI CDD KOG1203; Predicted dehydrogenase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G16720 : high chlorophyll fluorescence phenotype 173
RAP-DB (Rice) LOC_Os02g04510.1 : UOS1, putative, expressed
MaizeGDB (Corn) Zm00025a018408 , Zm00025a018409
Brachypodium KQK17449
Barley HORVU7Hr1G096250.13 , HORVU7Hr1G096250.12 , HORVU7Hr1G096250.11 , HORVU7Hr1G096250.10 , HORVU7Hr1G096250.17 , HORVU7Hr1G096250.16 , HORVU7Hr1G096250.15 , HORVU7Hr1G096250.14 , HORVU7Hr1G096250.1 , HORVU7Hr1G096250.9 , HORVU7Hr1G096250.8 , HORVU7Hr1G096250.3 , HORVU7Hr1G096250.2 , HORVU7Hr1G096250.7 , HORVU7Hr1G096250.6 , HORVU7Hr1G096250.5 , HORVU7Hr1G096250.4
Wheat TraesCS7A02G414600 , TraesCS7B02G314500 , TraesCS7D02G407700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
2 Sobic.003G340300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nodulin, putative, expressed -
3 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
4 Sobic.004G322600 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain(PubMedID : 26465154)@protein kinase domain containing protein, expressed -
5 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
6 Sobic.003G339200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
8 Sobic.007G065600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carotenoid synthesis regulator CarF, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
9 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
10 Sobic.007G121300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
11 Sobic.002G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@integral membrane transporter family protein, putative, expressed -
12 Sobic.009G246400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polyprenyl synthetase, putative, expressed K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
13 Sobic.004G153900 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
14 Sobic.009G194500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
16 Sobic.006G235300 expressed protein -
17 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G112900 expressed protein -
19 Sobic.004G085600 bZIP transcription factor domain containing protein, expressed K16241: transcription factor HY5
20 Sobic.006G235400 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase


Gene co-expression network
sample Sobic004G035100 Sobic004G035100 Sobic006G161500 Sobic006G161500 Sobic004G035100--Sobic006G161500 Sobic003G340300 Sobic003G340300 Sobic004G035100--Sobic003G340300 Sobic002G161400 Sobic002G161400 Sobic004G035100--Sobic002G161400 Sobic004G322600 Sobic004G322600 Sobic004G035100--Sobic004G322600 Sobic004G128900 Sobic004G128900 Sobic004G035100--Sobic004G128900 Sobic003G339200 Sobic003G339200 Sobic004G035100--Sobic003G339200 Sobic004G344600 Sobic004G344600 Sobic004G035100--Sobic004G344600 Sobic007G065600 Sobic007G065600 Sobic004G035100--Sobic007G065600 Sobic006G191500 Sobic006G191500 Sobic004G035100--Sobic006G191500 Sobic006G161500--Sobic004G128900 Sobic010G231300 Sobic010G231300 Sobic006G161500--Sobic010G231300 Sobic003G409700 Sobic003G409700 Sobic006G161500--Sobic003G409700 Sobic006G235400 Sobic006G235400 Sobic006G161500--Sobic006G235400 Sobic006G161500--Sobic004G322600 Sobic006G161500--Sobic004G035100 Sobic001G073300 Sobic001G073300 Sobic006G161500--Sobic001G073300 Sobic002G119100 Sobic002G119100 Sobic006G161500--Sobic002G119100 Sobic009G194500 Sobic009G194500 Sobic006G161500--Sobic009G194500 Sobic003G340300--Sobic004G035100 Sobic003G340300--Sobic004G344600 Sobic003G340300--Sobic002G161400 Sobic003G340300--Sobic004G128900 Sobic003G340300--Sobic003G339200 Sobic007G121300 Sobic007G121300 Sobic003G340300--Sobic007G121300 Sobic009G246400 Sobic009G246400 Sobic003G340300--Sobic009G246400 Sobic003G340300--Sobic007G065600 Sobic003G340300--Sobic006G191500 Sobic002G161400--Sobic006G191500 Sobic002G161400--Sobic004G344600 Sobic002G161400--Sobic004G128900 Sobic003G304300 Sobic003G304300 Sobic002G161400--Sobic003G304300 Sobic001G485100 Sobic001G485100 Sobic002G161400--Sobic001G485100 Sobic004G153900 Sobic004G153900 Sobic002G161400--Sobic004G153900 Sobic002G161400--Sobic003G339200 Sobic003G380200 Sobic003G380200 Sobic002G161400--Sobic003G380200 Sobic001G112900 Sobic001G112900 Sobic002G161400--Sobic001G112900 Sobic004G322700 Sobic004G322700 Sobic004G322600--Sobic004G322700 Sobic004G322600--Sobic002G119100 Sobic004G322600--Sobic006G161500 Sobic004G322600--Sobic009G194500 Sobic004G322600--Sobic004G035100 Sobic008G038500 Sobic008G038500 Sobic004G322600--Sobic008G038500 Sobic001G331600 Sobic001G331600 Sobic004G322600--Sobic001G331600 Sobic007G227100 Sobic007G227100 Sobic004G322600--Sobic007G227100 Sobic001G244600 Sobic001G244600 Sobic004G322600--Sobic001G244600 Sobic004G128900--Sobic002G161400 Sobic004G128900--Sobic004G153900 Sobic004G128900--Sobic006G191500 Sobic004G128900--Sobic006G235400 Sobic004G128900--Sobic006G161500 Sobic004G128900--Sobic004G344600 Sobic004G128900--Sobic003G380200 Sobic004G128900--Sobic001G331600 Sobic004G128900--Sobic001G485100 Sobic003G339200--Sobic001G112900 Sobic003G339200--Sobic004G344600 Sobic003G339200--Sobic002G161400 Sobic003G339200--Sobic003G304300 Sobic010G113200 Sobic010G113200 Sobic003G339200--Sobic010G113200 Sobic003G339200--Sobic009G246400 Sobic003G162400 Sobic003G162400 Sobic003G339200--Sobic003G162400 Sobic003G339200--Sobic006G191500 Sobic010G104700 Sobic010G104700 Sobic003G339200--Sobic010G104700 Sobic004G344600--Sobic002G161400 Sobic004G344600--Sobic001G112900 Sobic004G344600--Sobic003G339200 Sobic004G344600--Sobic003G304300 Sobic004G344600--Sobic006G191500 Sobic004G344600--Sobic010G104700 Sobic004G344600--Sobic001G485100 Sobic004G344600--Sobic004G128900 Sobic004G344600--Sobic009G246400 Sobic007G065600--Sobic001G485100 Sobic007G065600--Sobic004G344600 Sobic007G065600--Sobic002G161400 Sobic007G065600--Sobic006G191500 Sobic007G065600--Sobic004G128900 Sobic007G065600--Sobic006G161500 Sobic003G228300 Sobic003G228300 Sobic007G065600--Sobic003G228300 Sobic007G065600--Sobic003G380200 Sobic003G186800 Sobic003G186800 Sobic007G065600--Sobic003G186800 Sobic006G191500--Sobic002G161400 Sobic006G191500--Sobic003G380200 Sobic006G191500--Sobic001G485100 Sobic006G191500--Sobic003G304300 Sobic006G191500--Sobic004G128900 Sobic006G191500--Sobic004G344600 Sobic006G191500--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic006G191500--Sobic010G100900 Sobic001G046000 Sobic001G046000 Sobic006G191500--Sobic001G046000
Octagon: transcription factors


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