Gene annotation
Transcriptome id Sobic.007G065600.1
Synonym Sb07g005210, FAD4, FADA
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
carotenoid synthesis regulator CarF, putative, expressed
UniProt C5YI08
Pfam PF10520
Panther DB PTHR24067 PTHR24067:SF41
NCBI CDD -
KEGG Orthology K10704; ubiquitin-conjugating enzyme E2 variant
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27030 : fatty acid desaturase A
RAP-DB (Rice) LOC_Os08g08850.1 : carotenoid synthesis regulator CarF, putative, expressed
MaizeGDB (Corn) Zm00025a054783
Brachypodium -
Barley HORVU6Hr1G020060.1 , HORVU6Hr1G020060.2 , HORVU6Hr1G020060.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
3 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
4 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
5 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
6 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
7 Sobic.003G228300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed -
8 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
9 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
10 Sobic.003G304300 expressed protein -
11 Sobic.003G339200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.010G104700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
13 Sobic.003G340300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nodulin, putative, expressed -
14 Sobic.004G153900 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
15 Sobic.009G250400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed K03093: RNA polymerase sigma factor
16 Sobic.004G035100 UOS1, putative, expressed -
17 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
18 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.003G409700 rieske domain containing protein, expressed -
20 Sobic.001G112900 expressed protein -


Gene co-expression network
sample Sobic007G065600 Sobic007G065600 Sobic001G485100 Sobic001G485100 Sobic007G065600--Sobic001G485100 Sobic004G344600 Sobic004G344600 Sobic007G065600--Sobic004G344600 Sobic002G161400 Sobic002G161400 Sobic007G065600--Sobic002G161400 Sobic006G191500 Sobic006G191500 Sobic007G065600--Sobic006G191500 Sobic004G128900 Sobic004G128900 Sobic007G065600--Sobic004G128900 Sobic006G161500 Sobic006G161500 Sobic007G065600--Sobic006G161500 Sobic003G228300 Sobic003G228300 Sobic007G065600--Sobic003G228300 Sobic003G380200 Sobic003G380200 Sobic007G065600--Sobic003G380200 Sobic003G186800 Sobic003G186800 Sobic007G065600--Sobic003G186800 Sobic001G485100--Sobic006G191500 Sobic001G485100--Sobic002G161400 Sobic001G485100--Sobic003G380200 Sobic001G485100--Sobic003G186800 Sobic001G046000 Sobic001G046000 Sobic001G485100--Sobic001G046000 Sobic001G331600 Sobic001G331600 Sobic001G485100--Sobic001G331600 Sobic001G485100--Sobic003G228300 Sobic009G225600 Sobic009G225600 Sobic001G485100--Sobic009G225600 Sobic001G485100--Sobic004G344600 Sobic004G344600--Sobic002G161400 Sobic001G112900 Sobic001G112900 Sobic004G344600--Sobic001G112900 Sobic003G339200 Sobic003G339200 Sobic004G344600--Sobic003G339200 Sobic003G304300 Sobic003G304300 Sobic004G344600--Sobic003G304300 Sobic004G344600--Sobic006G191500 Sobic010G104700 Sobic010G104700 Sobic004G344600--Sobic010G104700 Sobic004G344600--Sobic001G485100 Sobic004G344600--Sobic004G128900 Sobic009G246400 Sobic009G246400 Sobic004G344600--Sobic009G246400 Sobic002G161400--Sobic006G191500 Sobic002G161400--Sobic004G344600 Sobic002G161400--Sobic004G128900 Sobic002G161400--Sobic003G304300 Sobic002G161400--Sobic001G485100 Sobic004G153900 Sobic004G153900 Sobic002G161400--Sobic004G153900 Sobic002G161400--Sobic003G339200 Sobic002G161400--Sobic003G380200 Sobic002G161400--Sobic001G112900 Sobic006G191500--Sobic002G161400 Sobic006G191500--Sobic003G380200 Sobic006G191500--Sobic001G485100 Sobic006G191500--Sobic003G304300 Sobic006G191500--Sobic004G128900 Sobic006G191500--Sobic004G344600 Sobic006G191500--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic006G191500--Sobic010G100900 Sobic006G191500--Sobic001G046000 Sobic004G128900--Sobic002G161400 Sobic004G128900--Sobic004G153900 Sobic004G128900--Sobic006G191500 Sobic006G235400 Sobic006G235400 Sobic004G128900--Sobic006G235400 Sobic004G128900--Sobic006G161500 Sobic004G128900--Sobic004G344600 Sobic004G128900--Sobic003G380200 Sobic004G128900--Sobic001G331600 Sobic004G128900--Sobic001G485100 Sobic006G161500--Sobic004G128900 Sobic010G231300 Sobic010G231300 Sobic006G161500--Sobic010G231300 Sobic003G409700 Sobic003G409700 Sobic006G161500--Sobic003G409700 Sobic006G161500--Sobic006G235400 Sobic004G322600 Sobic004G322600 Sobic006G161500--Sobic004G322600 Sobic004G035100 Sobic004G035100 Sobic006G161500--Sobic004G035100 Sobic001G073300 Sobic001G073300 Sobic006G161500--Sobic001G073300 Sobic002G119100 Sobic002G119100 Sobic006G161500--Sobic002G119100 Sobic009G194500 Sobic009G194500 Sobic006G161500--Sobic009G194500 Sobic003G228300--Sobic001G485100 Sobic002G047400 Sobic002G047400 Sobic003G228300--Sobic002G047400 Sobic003G228300--Sobic006G191500 Sobic003G228300--Sobic003G409700 Sobic008G149100 Sobic008G149100 Sobic003G228300--Sobic008G149100 Sobic001G499100 Sobic001G499100 Sobic003G228300--Sobic001G499100 Sobic009G133700 Sobic009G133700 Sobic003G228300--Sobic009G133700 Sobic003G228300--Sobic001G046000 Sobic003G228300--Sobic003G380200 Sobic003G380200--Sobic006G191500 Sobic003G380200--Sobic003G186800 Sobic003G380200--Sobic010G100900 Sobic003G380200--Sobic003G304300 Sobic004G267700 Sobic004G267700 Sobic003G380200--Sobic004G267700 Sobic003G380200--Sobic001G485100 Sobic007G087100 Sobic007G087100 Sobic003G380200--Sobic007G087100 Sobic003G380200--Sobic002G161400 Sobic004G268400 Sobic004G268400 Sobic003G380200--Sobic004G268400 Sobic003G186800--Sobic003G380200 Sobic003G186800--Sobic003G304300 Sobic003G186800--Sobic009G225600 Sobic003G186800--Sobic006G191500 Sobic003G186800--Sobic001G485100 Sobic010G101000 Sobic010G101000 Sobic003G186800--Sobic010G101000 Sobic003G186800--Sobic004G268400 Sobic003G186800--Sobic002G047400 Sobic003G186800--Sobic004G267700
Octagon: transcription factors


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