Gene annotation
Transcriptome id Sobic.009G250400.1
Synonym SIGE, Sb09g030110, ATSIG5, SIG5
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
RNA polymerase sigma factor, putative, expressed
UniProt C5YWL3
Pfam PF04542 PF04545 PF04539
Panther DB PTHR30603 PTHR30603:SF4
NCBI CDD -
KEGG Orthology K03093; RNA polymerase sigma factor
Gene Ontology GO:0016987; sigma factor activity GO:0006355regulation of transcription, DNA-templated GO:0006352DNA-templated transcription, initiation GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G24120 : sigma factor E
RAP-DB (Rice) LOC_Os05g50930.1 : RNA polymerase sigma factor, putative, expressed
MaizeGDB (Corn) Zm00025a044789
Brachypodium KQK04632 , PNT70630 , KQK04633
Barley HORVU1Hr1G093180.5 , HORVU1Hr1G093180.2 , HORVU1Hr1G093180.1 , HORVU1Hr1G093180.4
Wheat TraesCS1B02G461600 , TraesCS1A02G426700 , TraesCS1D02G436500
Populus -


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cDNA sequences
Sobic.009G250400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G228300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed -
2 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.009G133700 expressed protein -
5 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
6 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
7 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
8 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
9 Sobic.007G065600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carotenoid synthesis regulator CarF, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
10 Sobic.006G235400 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
11 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
12 Sobic.003G409700 rieske domain containing protein, expressed -
13 Sobic.002G162400 potassium channel protein, putative, expressed K05389: potassium channel subfamily K, other eukaryote
14 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
15 Sobic.004G153900 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
16 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
17 Sobic.008G129900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G263100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
19 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase


Gene co-expression network
sample Sobic009G250400 Sobic009G250400 Sobic003G228300 Sobic003G228300 Sobic009G250400--Sobic003G228300 Sobic003G341300 Sobic003G341300 Sobic009G250400--Sobic003G341300 Sobic001G485100 Sobic001G485100 Sobic009G250400--Sobic001G485100 Sobic009G133700 Sobic009G133700 Sobic009G250400--Sobic009G133700 Sobic004G128900 Sobic004G128900 Sobic009G250400--Sobic004G128900 Sobic001G180200 Sobic001G180200 Sobic009G250400--Sobic001G180200 Sobic006G191500 Sobic006G191500 Sobic009G250400--Sobic006G191500 Sobic006G161500 Sobic006G161500 Sobic009G250400--Sobic006G161500 Sobic007G065600 Sobic007G065600 Sobic009G250400--Sobic007G065600 Sobic003G228300--Sobic001G485100 Sobic002G047400 Sobic002G047400 Sobic003G228300--Sobic002G047400 Sobic003G228300--Sobic006G191500 Sobic003G409700 Sobic003G409700 Sobic003G228300--Sobic003G409700 Sobic008G149100 Sobic008G149100 Sobic003G228300--Sobic008G149100 Sobic001G499100 Sobic001G499100 Sobic003G228300--Sobic001G499100 Sobic003G228300--Sobic009G133700 Sobic001G046000 Sobic001G046000 Sobic003G228300--Sobic001G046000 Sobic003G380200 Sobic003G380200 Sobic003G228300--Sobic003G380200 Sobic003G341300--Sobic001G180200 Sobic007G157300 Sobic007G157300 Sobic003G341300--Sobic007G157300 Sobic001G283100 Sobic001G283100 Sobic003G341300--Sobic001G283100 Sobic003G341300--Sobic003G409700 Sobic006G235400 Sobic006G235400 Sobic003G341300--Sobic006G235400 Sobic002G162400 Sobic002G162400 Sobic003G341300--Sobic002G162400 Sobic001G077300 Sobic001G077300 Sobic003G341300--Sobic001G077300 Sobic006G090100 Sobic006G090100 Sobic003G341300--Sobic006G090100 Sobic003G094100 Sobic003G094100 Sobic003G341300--Sobic003G094100 Sobic001G485100--Sobic006G191500 Sobic002G161400 Sobic002G161400 Sobic001G485100--Sobic002G161400 Sobic001G485100--Sobic003G380200 Sobic003G186800 Sobic003G186800 Sobic001G485100--Sobic003G186800 Sobic001G485100--Sobic001G046000 Sobic001G331600 Sobic001G331600 Sobic001G485100--Sobic001G331600 Sobic001G485100--Sobic003G228300 Sobic009G225600 Sobic009G225600 Sobic001G485100--Sobic009G225600 Sobic004G344600 Sobic004G344600 Sobic001G485100--Sobic004G344600 Sobic009G133700--Sobic007G157300 Sobic009G133700--Sobic003G409700 Sobic009G133700--Sobic003G094100 Sobic009G133700--Sobic003G341300 Sobic009G133700--Sobic002G047400 Sobic007G135800 Sobic007G135800 Sobic009G133700--Sobic007G135800 Sobic003G005000 Sobic003G005000 Sobic009G133700--Sobic003G005000 Sobic009G133700--Sobic003G228300 Sobic004G202200 Sobic004G202200 Sobic009G133700--Sobic004G202200 Sobic004G128900--Sobic002G161400 Sobic004G153900 Sobic004G153900 Sobic004G128900--Sobic004G153900 Sobic004G128900--Sobic006G191500 Sobic004G128900--Sobic006G235400 Sobic004G128900--Sobic006G161500 Sobic004G128900--Sobic004G344600 Sobic004G128900--Sobic003G380200 Sobic004G128900--Sobic001G331600 Sobic004G128900--Sobic001G485100 Sobic001G180200--Sobic003G341300 Sobic002G206300 Sobic002G206300 Sobic001G180200--Sobic002G206300 Sobic001G180200--Sobic007G135800 Sobic009G038701 Sobic009G038701 Sobic001G180200--Sobic009G038701 Sobic009G207900 Sobic009G207900 Sobic001G180200--Sobic009G207900 Sobic001G180200--Sobic003G094100 Sobic001G504400 Sobic001G504400 Sobic001G180200--Sobic001G504400 Sobic001G263100 Sobic001G263100 Sobic001G180200--Sobic001G263100 Sobic001G180200--Sobic002G162400 Sobic006G191500--Sobic002G161400 Sobic006G191500--Sobic003G380200 Sobic006G191500--Sobic001G485100 Sobic003G304300 Sobic003G304300 Sobic006G191500--Sobic003G304300 Sobic006G191500--Sobic004G128900 Sobic006G191500--Sobic004G344600 Sobic006G191500--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic006G191500--Sobic010G100900 Sobic006G191500--Sobic001G046000 Sobic006G161500--Sobic004G128900 Sobic010G231300 Sobic010G231300 Sobic006G161500--Sobic010G231300 Sobic006G161500--Sobic003G409700 Sobic006G161500--Sobic006G235400 Sobic004G322600 Sobic004G322600 Sobic006G161500--Sobic004G322600 Sobic004G035100 Sobic004G035100 Sobic006G161500--Sobic004G035100 Sobic001G073300 Sobic001G073300 Sobic006G161500--Sobic001G073300 Sobic002G119100 Sobic002G119100 Sobic006G161500--Sobic002G119100 Sobic009G194500 Sobic009G194500 Sobic006G161500--Sobic009G194500 Sobic007G065600--Sobic001G485100 Sobic007G065600--Sobic004G344600 Sobic007G065600--Sobic002G161400 Sobic007G065600--Sobic006G191500 Sobic007G065600--Sobic004G128900 Sobic007G065600--Sobic006G161500 Sobic007G065600--Sobic003G228300 Sobic007G065600--Sobic003G380200 Sobic007G065600--Sobic003G186800
Octagon: transcription factors


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