Gene annotation
Transcriptome id Sobic.001G263100.2,Sobic.001G263100.5,Sobic.001G263100.1,Sobic.001G263100.3,Sobic.001G263100.4
Synonym Sb01g024860
Functional annotation endonuclease/exonuclease/phosphatase family domain containing protein, expressed
UniProt A0A1Z5S7R3 , A0A1Z5S7N5 , C5WNB7 , A0A1Z5S7Z1
Pfam PF03372 PF13833 PF03372
Panther DB PTHR12121 PTHR12121:SF44 PTHR12121 PTHR12121:SF31
NCBI CDD KOG2338; Transcriptional effector CCR4-related protein KOG0620Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G54130 : Calcium-binding endonuclease/exonuclease/phosphatase family
RAP-DB (Rice) LOC_Os10g13550.1 : endonuclease/exonuclease/phosphatase family domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ96427 , KQJ96426 , KQJ96428
Barley -
Wheat TraesCS1A02G131300 , TraesCS1D02G137500 , TraesCS1D02G137500 , TraesCS1D02G137500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G058100 light-mediated development protein DET1, putative, expressed K10571: de-etiolated-1
2 Sobic.010G231300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
3 Sobic.008G129900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.002G162400 potassium channel protein, putative, expressed K05389: potassium channel subfamily K, other eukaryote
5 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
6 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
7 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -
9 Sobic.006G235400 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
10 Sobic.009G256100 expressed protein -
11 Sobic.009G038701 - -
12 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
13 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
14 Sobic.003G073800 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
15 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
16 Sobic.003G409700 rieske domain containing protein, expressed -
17 Sobic.001G077300 thioredoxin, putative, expressed -
18 Sobic.001G244600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KIP1, putative, expressed -
19 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III
20 Sobic.004G082300 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic001G263100 Sobic001G263100 Sobic007G058100 Sobic007G058100 Sobic001G263100--Sobic007G058100 Sobic010G231300 Sobic010G231300 Sobic001G263100--Sobic010G231300 Sobic008G129900 Sobic008G129900 Sobic001G263100--Sobic008G129900 Sobic002G162400 Sobic002G162400 Sobic001G263100--Sobic002G162400 Sobic001G180200 Sobic001G180200 Sobic001G263100--Sobic001G180200 Sobic001G217900 Sobic001G217900 Sobic001G263100--Sobic001G217900 Sobic003G341300 Sobic003G341300 Sobic001G263100--Sobic003G341300 Sobic002G206300 Sobic002G206300 Sobic001G263100--Sobic002G206300 Sobic006G235400 Sobic006G235400 Sobic001G263100--Sobic006G235400 Sobic007G058100--Sobic001G263100 Sobic007G058100--Sobic001G217900 Sobic004G082300 Sobic004G082300 Sobic007G058100--Sobic004G082300 Sobic001G258200 Sobic001G258200 Sobic007G058100--Sobic001G258200 Sobic007G058100--Sobic003G341300 Sobic007G058100--Sobic008G129900 Sobic004G143300 Sobic004G143300 Sobic007G058100--Sobic004G143300 Sobic009G256100 Sobic009G256100 Sobic007G058100--Sobic009G256100 Sobic001G345100 Sobic001G345100 Sobic007G058100--Sobic001G345100 Sobic010G231300--Sobic008G129900 Sobic010G231300--Sobic006G235400 Sobic010G231300--Sobic001G217900 Sobic010G231300--Sobic001G263100 Sobic006G161500 Sobic006G161500 Sobic010G231300--Sobic006G161500 Sobic007G133000 Sobic007G133000 Sobic010G231300--Sobic007G133000 Sobic010G231300--Sobic003G341300 Sobic010G231300--Sobic001G180200 Sobic010G231300--Sobic002G162400 Sobic008G129900--Sobic010G231300 Sobic008G033000 Sobic008G033000 Sobic008G129900--Sobic008G033000 Sobic008G129900--Sobic001G258200 Sobic008G129900--Sobic001G217900 Sobic008G129900--Sobic006G235400 Sobic003G097600 Sobic003G097600 Sobic008G129900--Sobic003G097600 Sobic008G129900--Sobic001G263100 Sobic008G129900--Sobic002G206300 Sobic008G129900--Sobic003G341300 Sobic002G162400--Sobic003G341300 Sobic002G162400--Sobic001G263100 Sobic002G162400--Sobic001G180200 Sobic002G162400--Sobic002G206300 Sobic002G162400--Sobic010G231300 Sobic002G162400--Sobic006G235400 Sobic001G077300 Sobic001G077300 Sobic002G162400--Sobic001G077300 Sobic002G162400--Sobic001G258200 Sobic002G162400--Sobic008G129900 Sobic001G180200--Sobic003G341300 Sobic001G180200--Sobic002G206300 Sobic007G135800 Sobic007G135800 Sobic001G180200--Sobic007G135800 Sobic009G038701 Sobic009G038701 Sobic001G180200--Sobic009G038701 Sobic009G207900 Sobic009G207900 Sobic001G180200--Sobic009G207900 Sobic003G094100 Sobic003G094100 Sobic001G180200--Sobic003G094100 Sobic001G504400 Sobic001G504400 Sobic001G180200--Sobic001G504400 Sobic001G180200--Sobic001G263100 Sobic001G180200--Sobic002G162400 Sobic001G217900--Sobic007G058100 Sobic001G217900--Sobic010G231300 Sobic001G217900--Sobic008G129900 Sobic001G378100 Sobic001G378100 Sobic001G217900--Sobic001G378100 Sobic001G217900--Sobic001G258200 Sobic001G217900--Sobic002G206300 Sobic001G217900--Sobic001G263100 Sobic001G217900--Sobic008G033000 Sobic001G540600 Sobic001G540600 Sobic001G217900--Sobic001G540600 Sobic003G341300--Sobic001G180200 Sobic007G157300 Sobic007G157300 Sobic003G341300--Sobic007G157300 Sobic001G283100 Sobic001G283100 Sobic003G341300--Sobic001G283100 Sobic003G409700 Sobic003G409700 Sobic003G341300--Sobic003G409700 Sobic003G341300--Sobic006G235400 Sobic003G341300--Sobic002G162400 Sobic003G341300--Sobic001G077300 Sobic006G090100 Sobic006G090100 Sobic003G341300--Sobic006G090100 Sobic003G341300--Sobic003G094100 Sobic002G206300--Sobic009G038701 Sobic002G206300--Sobic001G504400 Sobic002G206300--Sobic001G180200 Sobic001G536700 Sobic001G536700 Sobic002G206300--Sobic001G536700 Sobic002G206300--Sobic009G207900 Sobic002G206300--Sobic001G258200 Sobic002G206300--Sobic008G129900 Sobic002G206300--Sobic001G217900 Sobic002G206300--Sobic003G341300 Sobic006G235400--Sobic010G231300 Sobic006G235400--Sobic001G077300 Sobic004G128900 Sobic004G128900 Sobic006G235400--Sobic004G128900 Sobic006G235400--Sobic003G341300 Sobic006G235400--Sobic003G409700 Sobic006G235400--Sobic008G129900 Sobic006G235400--Sobic006G161500 Sobic003G380200 Sobic003G380200 Sobic006G235400--Sobic003G380200 Sobic006G235400--Sobic001G180200
Octagon: transcription factors


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