Gene annotation
Transcriptome id Sobic.006G161500.1
Synonym Sb06g023840, ATSCO1, ATSCO1/CPEF-G, SCO1
Functional annotation elongation factor, putative, expressed
UniProt C5YCZ2
Pfam PF03144 PF00679 PF14492 PF03764 PF00009
Panther DB PTHR23115 PTHR23115:SF66
NCBI CDD -
KEGG Orthology K02355; fusA, GFM, elongation factor G
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G62750 : Translation elongation factor EFG/EF2 protein
RAP-DB (Rice) LOC_Os04g45490.1 : elongation factor, putative, expressed
MaizeGDB (Corn) Zm00025a056605 , Zm00025a020436 , Zm00025a010415
Brachypodium KQJ83807
Barley HORVU2Hr1G092180.2 , HORVU2Hr1G092180.3 , HORVU2Hr1G092180.1
Wheat TraesCS2D02G383800 , TraesCS2B02G404600 , TraesCS2A02G387000
Populus PNT45005 , PNT45004 , PNT45006


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
2 Sobic.010G231300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
3 Sobic.003G409700 rieske domain containing protein, expressed -
4 Sobic.006G235400 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
5 Sobic.004G322600 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain(PubMedID : 26465154)@protein kinase domain containing protein, expressed -
6 Sobic.004G035100 UOS1, putative, expressed -
7 Sobic.001G073300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
8 Sobic.002G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@integral membrane transporter family protein, putative, expressed -
9 Sobic.009G194500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.001G263100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
11 Sobic.008G129900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.001G244600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KIP1, putative, expressed -
13 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
15 Sobic.010G104800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
16 Sobic.007G065600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carotenoid synthesis regulator CarF, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
17 Sobic.002G162400 potassium channel protein, putative, expressed K05389: potassium channel subfamily K, other eukaryote
18 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
20 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III


Gene co-expression network
sample Sobic006G161500 Sobic006G161500 Sobic004G128900 Sobic004G128900 Sobic006G161500--Sobic004G128900 Sobic010G231300 Sobic010G231300 Sobic006G161500--Sobic010G231300 Sobic003G409700 Sobic003G409700 Sobic006G161500--Sobic003G409700 Sobic006G235400 Sobic006G235400 Sobic006G161500--Sobic006G235400 Sobic004G322600 Sobic004G322600 Sobic006G161500--Sobic004G322600 Sobic004G035100 Sobic004G035100 Sobic006G161500--Sobic004G035100 Sobic001G073300 Sobic001G073300 Sobic006G161500--Sobic001G073300 Sobic002G119100 Sobic002G119100 Sobic006G161500--Sobic002G119100 Sobic009G194500 Sobic009G194500 Sobic006G161500--Sobic009G194500 Sobic002G161400 Sobic002G161400 Sobic004G128900--Sobic002G161400 Sobic004G153900 Sobic004G153900 Sobic004G128900--Sobic004G153900 Sobic006G191500 Sobic006G191500 Sobic004G128900--Sobic006G191500 Sobic004G128900--Sobic006G235400 Sobic004G128900--Sobic006G161500 Sobic004G344600 Sobic004G344600 Sobic004G128900--Sobic004G344600 Sobic003G380200 Sobic003G380200 Sobic004G128900--Sobic003G380200 Sobic001G331600 Sobic001G331600 Sobic004G128900--Sobic001G331600 Sobic001G485100 Sobic001G485100 Sobic004G128900--Sobic001G485100 Sobic008G129900 Sobic008G129900 Sobic010G231300--Sobic008G129900 Sobic010G231300--Sobic006G235400 Sobic001G217900 Sobic001G217900 Sobic010G231300--Sobic001G217900 Sobic001G263100 Sobic001G263100 Sobic010G231300--Sobic001G263100 Sobic010G231300--Sobic006G161500 Sobic007G133000 Sobic007G133000 Sobic010G231300--Sobic007G133000 Sobic003G341300 Sobic003G341300 Sobic010G231300--Sobic003G341300 Sobic001G180200 Sobic001G180200 Sobic010G231300--Sobic001G180200 Sobic002G162400 Sobic002G162400 Sobic010G231300--Sobic002G162400 Sobic003G409700--Sobic003G341300 Sobic009G133700 Sobic009G133700 Sobic003G409700--Sobic009G133700 Sobic007G135800 Sobic007G135800 Sobic003G409700--Sobic007G135800 Sobic003G409700--Sobic006G235400 Sobic003G409700--Sobic006G161500 Sobic003G409700--Sobic003G380200 Sobic003G409700--Sobic004G128900 Sobic007G157300 Sobic007G157300 Sobic003G409700--Sobic007G157300 Sobic003G228300 Sobic003G228300 Sobic003G409700--Sobic003G228300 Sobic006G235400--Sobic010G231300 Sobic001G077300 Sobic001G077300 Sobic006G235400--Sobic001G077300 Sobic006G235400--Sobic004G128900 Sobic006G235400--Sobic003G341300 Sobic006G235400--Sobic003G409700 Sobic006G235400--Sobic008G129900 Sobic006G235400--Sobic006G161500 Sobic006G235400--Sobic003G380200 Sobic006G235400--Sobic001G180200 Sobic004G322700 Sobic004G322700 Sobic004G322600--Sobic004G322700 Sobic004G322600--Sobic002G119100 Sobic004G322600--Sobic006G161500 Sobic004G322600--Sobic009G194500 Sobic004G322600--Sobic004G035100 Sobic008G038500 Sobic008G038500 Sobic004G322600--Sobic008G038500 Sobic004G322600--Sobic001G331600 Sobic007G227100 Sobic007G227100 Sobic004G322600--Sobic007G227100 Sobic001G244600 Sobic001G244600 Sobic004G322600--Sobic001G244600 Sobic004G035100--Sobic006G161500 Sobic003G340300 Sobic003G340300 Sobic004G035100--Sobic003G340300 Sobic004G035100--Sobic002G161400 Sobic004G035100--Sobic004G322600 Sobic004G035100--Sobic004G128900 Sobic003G339200 Sobic003G339200 Sobic004G035100--Sobic003G339200 Sobic004G035100--Sobic004G344600 Sobic007G065600 Sobic007G065600 Sobic004G035100--Sobic007G065600 Sobic004G035100--Sobic006G191500 Sobic010G104800 Sobic010G104800 Sobic001G073300--Sobic010G104800 Sobic001G073300--Sobic006G161500 Sobic009G256100 Sobic009G256100 Sobic001G073300--Sobic009G256100 Sobic001G073300--Sobic001G244600 Sobic001G073300--Sobic003G409700 Sobic002G390100 Sobic002G390100 Sobic001G073300--Sobic002G390100 Sobic001G073300--Sobic010G231300 Sobic003G042900 Sobic003G042900 Sobic001G073300--Sobic003G042900 Sobic001G073300--Sobic008G129900 Sobic002G119100--Sobic009G194500 Sobic002G119100--Sobic004G322600 Sobic002G119100--Sobic006G161500 Sobic002G119100--Sobic008G038500 Sobic004G127800 Sobic004G127800 Sobic002G119100--Sobic004G127800 Sobic002G119100--Sobic001G244600 Sobic002G119100--Sobic004G322700 Sobic002G119100--Sobic007G227100 Sobic002G293500 Sobic002G293500 Sobic002G119100--Sobic002G293500 Sobic009G194500--Sobic002G119100 Sobic009G194500--Sobic006G161500 Sobic009G194500--Sobic010G231300 Sobic009G194500--Sobic004G322600 Sobic009G194500--Sobic008G038500 Sobic003G314000 Sobic003G314000 Sobic009G194500--Sobic003G314000 Sobic007G140700 Sobic007G140700 Sobic009G194500--Sobic007G140700 Sobic009G194500--Sobic004G127800 Sobic009G194500--Sobic006G235400
Octagon: transcription factors


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