Gene annotation
Transcriptome id Sobic.004G128900.1
Synonym Sb04g011160
Functional annotation GTP-binding protein typA/bipA, putative, expressed
UniProt A0A194YPA2
Pfam PF01926 PF03144 PF00679
Panther DB PTHR23115 PTHR23115:SF165
NCBI CDD -
KEGG Orthology K06207; typA, GTP-binding protein
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G13650 : elongation factor family protein
RAP-DB (Rice) LOC_Os02g18450.1 : GTP-binding protein typA/bipA, putative, expressed
MaizeGDB (Corn) Zm00025a019730
Brachypodium PNT66356
Barley HORVU6Hr1G050160.9 , HORVU6Hr1G050160.2 , HORVU6Hr1G050160.3 , HORVU6Hr1G050160.1 , HORVU6Hr1G050160.6 , HORVU6Hr1G050160.7 , HORVU6Hr1G050160.4 , HORVU6Hr1G050160.5
Wheat TraesCS6A02G192800 , TraesCS6B02G224800 , TraesCS6B02G224800 , TraesCS6B02G224800 , TraesCS6B02G224800 , TraesCS6D02G183500
Populus PNT29872 , PNT29870 , PNS22417


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cDNA sequences
Sobic.004G128900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
2 Sobic.004G153900 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
3 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
4 Sobic.006G235400 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
5 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
6 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
7 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
8 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
9 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
11 Sobic.003G304300 expressed protein -
12 Sobic.003G409700 rieske domain containing protein, expressed -
13 Sobic.009G246400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polyprenyl synthetase, putative, expressed K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
14 Sobic.010G104700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
15 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
17 Sobic.004G035100 UOS1, putative, expressed -
18 Sobic.001G263100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
19 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
20 Sobic.007G121300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5


Gene co-expression network
sample Sobic004G128900 Sobic004G128900 Sobic002G161400 Sobic002G161400 Sobic004G128900--Sobic002G161400 Sobic004G153900 Sobic004G153900 Sobic004G128900--Sobic004G153900 Sobic006G191500 Sobic006G191500 Sobic004G128900--Sobic006G191500 Sobic006G235400 Sobic006G235400 Sobic004G128900--Sobic006G235400 Sobic006G161500 Sobic006G161500 Sobic004G128900--Sobic006G161500 Sobic004G344600 Sobic004G344600 Sobic004G128900--Sobic004G344600 Sobic003G380200 Sobic003G380200 Sobic004G128900--Sobic003G380200 Sobic001G331600 Sobic001G331600 Sobic004G128900--Sobic001G331600 Sobic001G485100 Sobic001G485100 Sobic004G128900--Sobic001G485100 Sobic002G161400--Sobic006G191500 Sobic002G161400--Sobic004G344600 Sobic002G161400--Sobic004G128900 Sobic003G304300 Sobic003G304300 Sobic002G161400--Sobic003G304300 Sobic002G161400--Sobic001G485100 Sobic002G161400--Sobic004G153900 Sobic003G339200 Sobic003G339200 Sobic002G161400--Sobic003G339200 Sobic002G161400--Sobic003G380200 Sobic001G112900 Sobic001G112900 Sobic002G161400--Sobic001G112900 Sobic004G153900--Sobic004G128900 Sobic004G153900--Sobic002G161400 Sobic010G104700 Sobic010G104700 Sobic004G153900--Sobic010G104700 Sobic001G046000 Sobic001G046000 Sobic004G153900--Sobic001G046000 Sobic004G153900--Sobic001G331600 Sobic004G153900--Sobic006G191500 Sobic004G153900--Sobic001G485100 Sobic008G149100 Sobic008G149100 Sobic004G153900--Sobic008G149100 Sobic004G153900--Sobic004G344600 Sobic006G191500--Sobic002G161400 Sobic006G191500--Sobic003G380200 Sobic006G191500--Sobic001G485100 Sobic006G191500--Sobic003G304300 Sobic006G191500--Sobic004G128900 Sobic006G191500--Sobic004G344600 Sobic003G186800 Sobic003G186800 Sobic006G191500--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic006G191500--Sobic010G100900 Sobic006G191500--Sobic001G046000 Sobic010G231300 Sobic010G231300 Sobic006G235400--Sobic010G231300 Sobic001G077300 Sobic001G077300 Sobic006G235400--Sobic001G077300 Sobic006G235400--Sobic004G128900 Sobic003G341300 Sobic003G341300 Sobic006G235400--Sobic003G341300 Sobic003G409700 Sobic003G409700 Sobic006G235400--Sobic003G409700 Sobic008G129900 Sobic008G129900 Sobic006G235400--Sobic008G129900 Sobic006G235400--Sobic006G161500 Sobic006G235400--Sobic003G380200 Sobic001G180200 Sobic001G180200 Sobic006G235400--Sobic001G180200 Sobic006G161500--Sobic004G128900 Sobic006G161500--Sobic010G231300 Sobic006G161500--Sobic003G409700 Sobic006G161500--Sobic006G235400 Sobic004G322600 Sobic004G322600 Sobic006G161500--Sobic004G322600 Sobic004G035100 Sobic004G035100 Sobic006G161500--Sobic004G035100 Sobic001G073300 Sobic001G073300 Sobic006G161500--Sobic001G073300 Sobic002G119100 Sobic002G119100 Sobic006G161500--Sobic002G119100 Sobic009G194500 Sobic009G194500 Sobic006G161500--Sobic009G194500 Sobic004G344600--Sobic002G161400 Sobic004G344600--Sobic001G112900 Sobic004G344600--Sobic003G339200 Sobic004G344600--Sobic003G304300 Sobic004G344600--Sobic006G191500 Sobic004G344600--Sobic010G104700 Sobic004G344600--Sobic001G485100 Sobic004G344600--Sobic004G128900 Sobic009G246400 Sobic009G246400 Sobic004G344600--Sobic009G246400 Sobic003G380200--Sobic006G191500 Sobic003G380200--Sobic003G186800 Sobic003G380200--Sobic010G100900 Sobic003G380200--Sobic003G304300 Sobic004G267700 Sobic004G267700 Sobic003G380200--Sobic004G267700 Sobic003G380200--Sobic001G485100 Sobic007G087100 Sobic007G087100 Sobic003G380200--Sobic007G087100 Sobic003G380200--Sobic002G161400 Sobic004G268400 Sobic004G268400 Sobic003G380200--Sobic004G268400 Sobic001G331600--Sobic001G485100 Sobic001G331600--Sobic004G128900 Sobic001G331600--Sobic004G153900 Sobic001G331600--Sobic002G161400 Sobic001G331600--Sobic001G046000 Sobic004G312600 Sobic004G312600 Sobic001G331600--Sobic004G312600 Sobic007G227100 Sobic007G227100 Sobic001G331600--Sobic007G227100 Sobic001G331600--Sobic006G191500 Sobic001G331600--Sobic004G344600 Sobic001G485100--Sobic006G191500 Sobic001G485100--Sobic002G161400 Sobic001G485100--Sobic003G380200 Sobic001G485100--Sobic003G186800 Sobic001G485100--Sobic001G046000 Sobic001G485100--Sobic001G331600 Sobic003G228300 Sobic003G228300 Sobic001G485100--Sobic003G228300 Sobic009G225600 Sobic009G225600 Sobic001G485100--Sobic009G225600 Sobic001G485100--Sobic004G344600
Octagon: transcription factors


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