Gene annotation
Transcriptome id Sobic.007G121300.1,Sobic.007G121300.2
Synonym CFIM-25, ATCFIM-25, Sb07g019840,
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Up-reguralion under heat (PubMedID : 24916767)
cleavage and polyadenylation specificity factor subunit 5, putative, expressed
UniProt A0A1Z5RAI6 , C5YKQ3
Pfam PF13869
Panther DB PTHR13047 PTHR13047:SF1
NCBI CDD KOG1689; mRNA cleavage factor I subunit
KEGG Orthology K14397; NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
Gene Ontology GO:0006378; mRNA polyadenylation GO:0005849mRNA cleavage factor complex GO:0003729mRNA binding


Orthologs (automatic annotation)
TAIR AT4G29820 : homolog of CFIM-25
RAP-DB (Rice) LOC_Os08g30820.1 : cleavage and polyadenylation specificity factor subunit 5, putative, expressed
MaizeGDB (Corn) Zm00025a030991
Brachypodium KQJ98186
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G121300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
2 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
3 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
4 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
5 Sobic.003G340300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nodulin, putative, expressed -
6 Sobic.009G259100 CCT motif family protein, expressed -
7 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
8 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.004G035100 UOS1, putative, expressed -
10 Sobic.004G322600 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain(PubMedID : 26465154)@protein kinase domain containing protein, expressed -
11 Sobic.004G153900 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
12 Sobic.001G112900 expressed protein -
13 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
14 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
16 Sobic.003G339200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.003G304300 expressed protein -
18 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
19 Sobic.006G235300 expressed protein -
20 Sobic.002G275100 response regulator receiver domain containing protein, expressed K12130: pseudo-response regulator 5


Gene co-expression network
sample Sobic007G121300 Sobic007G121300 Sobic004G128900 Sobic004G128900 Sobic007G121300--Sobic004G128900 Sobic002G161400 Sobic002G161400 Sobic007G121300--Sobic002G161400 Sobic004G344600 Sobic004G344600 Sobic007G121300--Sobic004G344600 Sobic001G331600 Sobic001G331600 Sobic007G121300--Sobic001G331600 Sobic003G340300 Sobic003G340300 Sobic007G121300--Sobic003G340300 Sobic009G259100 Sobic009G259100 Sobic007G121300--Sobic009G259100 Sobic006G191500 Sobic006G191500 Sobic007G121300--Sobic006G191500 Sobic001G485100 Sobic001G485100 Sobic007G121300--Sobic001G485100 Sobic004G035100 Sobic004G035100 Sobic007G121300--Sobic004G035100 Sobic004G128900--Sobic002G161400 Sobic004G153900 Sobic004G153900 Sobic004G128900--Sobic004G153900 Sobic004G128900--Sobic006G191500 Sobic006G235400 Sobic006G235400 Sobic004G128900--Sobic006G235400 Sobic006G161500 Sobic006G161500 Sobic004G128900--Sobic006G161500 Sobic004G128900--Sobic004G344600 Sobic003G380200 Sobic003G380200 Sobic004G128900--Sobic003G380200 Sobic004G128900--Sobic001G331600 Sobic004G128900--Sobic001G485100 Sobic002G161400--Sobic006G191500 Sobic002G161400--Sobic004G344600 Sobic002G161400--Sobic004G128900 Sobic003G304300 Sobic003G304300 Sobic002G161400--Sobic003G304300 Sobic002G161400--Sobic001G485100 Sobic002G161400--Sobic004G153900 Sobic003G339200 Sobic003G339200 Sobic002G161400--Sobic003G339200 Sobic002G161400--Sobic003G380200 Sobic001G112900 Sobic001G112900 Sobic002G161400--Sobic001G112900 Sobic004G344600--Sobic002G161400 Sobic004G344600--Sobic001G112900 Sobic004G344600--Sobic003G339200 Sobic004G344600--Sobic003G304300 Sobic004G344600--Sobic006G191500 Sobic010G104700 Sobic010G104700 Sobic004G344600--Sobic010G104700 Sobic004G344600--Sobic001G485100 Sobic004G344600--Sobic004G128900 Sobic009G246400 Sobic009G246400 Sobic004G344600--Sobic009G246400 Sobic001G331600--Sobic001G485100 Sobic001G331600--Sobic004G128900 Sobic001G331600--Sobic004G153900 Sobic001G331600--Sobic002G161400 Sobic001G046000 Sobic001G046000 Sobic001G331600--Sobic001G046000 Sobic004G312600 Sobic004G312600 Sobic001G331600--Sobic004G312600 Sobic007G227100 Sobic007G227100 Sobic001G331600--Sobic007G227100 Sobic001G331600--Sobic006G191500 Sobic001G331600--Sobic004G344600 Sobic003G340300--Sobic004G035100 Sobic003G340300--Sobic004G344600 Sobic003G340300--Sobic002G161400 Sobic003G340300--Sobic004G128900 Sobic003G340300--Sobic003G339200 Sobic003G340300--Sobic007G121300 Sobic003G340300--Sobic009G246400 Sobic007G065600 Sobic007G065600 Sobic003G340300--Sobic007G065600 Sobic003G340300--Sobic006G191500 Sobic002G275100 Sobic002G275100 Sobic009G259100--Sobic002G275100 Sobic009G259100--Sobic003G380200 Sobic009G259100--Sobic004G344600 Sobic004G267700 Sobic004G267700 Sobic009G259100--Sobic004G267700 Sobic010G100900 Sobic010G100900 Sobic009G259100--Sobic010G100900 Sobic009G259100--Sobic003G304300 Sobic009G259100--Sobic007G121300 Sobic002G351200 Sobic002G351200 Sobic009G259100--Sobic002G351200 Sobic009G259100--Sobic002G161400 Sobic006G191500--Sobic002G161400 Sobic006G191500--Sobic003G380200 Sobic006G191500--Sobic001G485100 Sobic006G191500--Sobic003G304300 Sobic006G191500--Sobic004G128900 Sobic006G191500--Sobic004G344600 Sobic003G186800 Sobic003G186800 Sobic006G191500--Sobic003G186800 Sobic006G191500--Sobic010G100900 Sobic006G191500--Sobic001G046000 Sobic001G485100--Sobic006G191500 Sobic001G485100--Sobic002G161400 Sobic001G485100--Sobic003G380200 Sobic001G485100--Sobic003G186800 Sobic001G485100--Sobic001G046000 Sobic001G485100--Sobic001G331600 Sobic003G228300 Sobic003G228300 Sobic001G485100--Sobic003G228300 Sobic009G225600 Sobic009G225600 Sobic001G485100--Sobic009G225600 Sobic001G485100--Sobic004G344600 Sobic004G035100--Sobic006G161500 Sobic004G035100--Sobic003G340300 Sobic004G035100--Sobic002G161400 Sobic004G322600 Sobic004G322600 Sobic004G035100--Sobic004G322600 Sobic004G035100--Sobic004G128900 Sobic004G035100--Sobic003G339200 Sobic004G035100--Sobic004G344600 Sobic004G035100--Sobic007G065600 Sobic004G035100--Sobic006G191500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.