Gene annotation
Transcriptome id Sobic.009G259100.1
Synonym
Functional annotation CCT motif family protein, expressed
UniProt A0A1B6PAF9
Pfam PF06203
Panther DB PTHR31717 PTHR31717:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G53420 : CCT motif family protein
RAP-DB (Rice) LOC_Os05g51690.1 : CCT motif family protein, expressed
MaizeGDB (Corn) Zm00025a044803 , Zm00025a031628 , Zm00025a015581 , Zm00025a036823
Brachypodium KQK04553 , KQK04552 , KQK04551
Barley HORVU1Hr1G095390.1 , HORVU1Hr1G095410.2 , HORVU1Hr1G095410.1 , HORVU1Hr1G095410.6 , HORVU1Hr1G095410.7 , HORVU1Hr1G095410.4 , HORVU1Hr1G095410.5 , HORVU1Hr1G095410.3
Wheat TraesCS1B02G479200 , TraesCS1B02G479200 , TraesCS1A02G444200 , TraesCS1D02G452200 , TraesCS1B02G478700 , TraesCS1B02G478700 , TraesCS1D02G452600 , TraesCS1D02G452600 , TraesCS1D02G452600 , TraesCS1B02G479000 , TraesCS1A02G444200
Populus -


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cDNA sequences
Sobic.009G259100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G275100 response regulator receiver domain containing protein, expressed K12130: pseudo-response regulator 5
2 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
3 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
4 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
5 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
6 Sobic.003G304300 expressed protein -
7 Sobic.007G121300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
8 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
9 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
10 Sobic.003G340300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nodulin, putative, expressed -
11 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
12 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
13 Sobic.006G041000 "Oxidoreductase, zinc-binding dehydrogenase family protein"("PubMedID : 26759170,PubMedID : 24597475")@dehydrogenase, putative, expressed -
14 Sobic.001G112900 expressed protein -
15 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
16 Sobic.007G016600 expressed protein -
17 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
18 Sobic.001G122900 expressed protein -
19 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
20 Sobic.003G186800 transporter, major facilitator family, putative, expressed -


Gene co-expression network
sample Sobic009G259100 Sobic009G259100 Sobic002G275100 Sobic002G275100 Sobic009G259100--Sobic002G275100 Sobic003G380200 Sobic003G380200 Sobic009G259100--Sobic003G380200 Sobic004G344600 Sobic004G344600 Sobic009G259100--Sobic004G344600 Sobic004G267700 Sobic004G267700 Sobic009G259100--Sobic004G267700 Sobic010G100900 Sobic010G100900 Sobic009G259100--Sobic010G100900 Sobic003G304300 Sobic003G304300 Sobic009G259100--Sobic003G304300 Sobic007G121300 Sobic007G121300 Sobic009G259100--Sobic007G121300 Sobic002G351200 Sobic002G351200 Sobic009G259100--Sobic002G351200 Sobic002G161400 Sobic002G161400 Sobic009G259100--Sobic002G161400 Sobic002G275100--Sobic009G259100 Sobic002G275100--Sobic003G380200 Sobic004G127800 Sobic004G127800 Sobic002G275100--Sobic004G127800 Sobic002G275100--Sobic010G100900 Sobic010G223200 Sobic010G223200 Sobic002G275100--Sobic010G223200 Sobic002G132400 Sobic002G132400 Sobic002G275100--Sobic002G132400 Sobic004G271600 Sobic004G271600 Sobic002G275100--Sobic004G271600 Sobic007G006200 Sobic007G006200 Sobic002G275100--Sobic007G006200 Sobic006G191500 Sobic006G191500 Sobic002G275100--Sobic006G191500 Sobic003G380200--Sobic006G191500 Sobic003G186800 Sobic003G186800 Sobic003G380200--Sobic003G186800 Sobic003G380200--Sobic010G100900 Sobic003G380200--Sobic003G304300 Sobic003G380200--Sobic004G267700 Sobic001G485100 Sobic001G485100 Sobic003G380200--Sobic001G485100 Sobic007G087100 Sobic007G087100 Sobic003G380200--Sobic007G087100 Sobic003G380200--Sobic002G161400 Sobic004G268400 Sobic004G268400 Sobic003G380200--Sobic004G268400 Sobic004G344600--Sobic002G161400 Sobic001G112900 Sobic001G112900 Sobic004G344600--Sobic001G112900 Sobic003G339200 Sobic003G339200 Sobic004G344600--Sobic003G339200 Sobic004G344600--Sobic003G304300 Sobic004G344600--Sobic006G191500 Sobic010G104700 Sobic010G104700 Sobic004G344600--Sobic010G104700 Sobic004G344600--Sobic001G485100 Sobic004G128900 Sobic004G128900 Sobic004G344600--Sobic004G128900 Sobic009G246400 Sobic009G246400 Sobic004G344600--Sobic009G246400 Sobic004G267700--Sobic004G268400 Sobic004G267700--Sobic003G304300 Sobic010G101000 Sobic010G101000 Sobic004G267700--Sobic010G101000 Sobic007G016600 Sobic007G016600 Sobic004G267700--Sobic007G016600 Sobic004G267700--Sobic003G380200 Sobic004G267700--Sobic002G351200 Sobic001G018000 Sobic001G018000 Sobic004G267700--Sobic001G018000 Sobic004G267700--Sobic003G186800 Sobic004G267700--Sobic010G100900 Sobic010G100900--Sobic002G351200 Sobic010G100900--Sobic003G380200 Sobic010G100900--Sobic002G132400 Sobic010G100900--Sobic004G268400 Sobic010G100900--Sobic003G304300 Sobic010G100900--Sobic004G267700 Sobic010G100900--Sobic004G271600 Sobic002G356900 Sobic002G356900 Sobic010G100900--Sobic002G356900 Sobic010G100900--Sobic004G128900 Sobic003G304300--Sobic004G267700 Sobic003G304300--Sobic006G191500 Sobic003G304300--Sobic002G351200 Sobic003G304300--Sobic002G161400 Sobic003G304300--Sobic004G344600 Sobic003G304300--Sobic001G112900 Sobic003G304300--Sobic003G186800 Sobic003G304300--Sobic003G380200 Sobic003G304300--Sobic004G268400 Sobic007G121300--Sobic004G128900 Sobic007G121300--Sobic002G161400 Sobic007G121300--Sobic004G344600 Sobic001G331600 Sobic001G331600 Sobic007G121300--Sobic001G331600 Sobic003G340300 Sobic003G340300 Sobic007G121300--Sobic003G340300 Sobic007G121300--Sobic009G259100 Sobic007G121300--Sobic006G191500 Sobic007G121300--Sobic001G485100 Sobic004G035100 Sobic004G035100 Sobic007G121300--Sobic004G035100 Sobic002G351200--Sobic010G100900 Sobic002G351200--Sobic001G018000 Sobic002G351200--Sobic003G304300 Sobic002G351200--Sobic004G268400 Sobic002G351200--Sobic004G267700 Sobic002G351200--Sobic010G101000 Sobic002G351200--Sobic002G132400 Sobic002G351200--Sobic003G186800 Sobic002G213400 Sobic002G213400 Sobic002G351200--Sobic002G213400 Sobic002G161400--Sobic006G191500 Sobic002G161400--Sobic004G344600 Sobic002G161400--Sobic004G128900 Sobic002G161400--Sobic003G304300 Sobic002G161400--Sobic001G485100 Sobic004G153900 Sobic004G153900 Sobic002G161400--Sobic004G153900 Sobic002G161400--Sobic003G339200 Sobic002G161400--Sobic003G380200 Sobic002G161400--Sobic001G112900
Octagon: transcription factors


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