Gene annotation
Transcriptome id Sobic.001G331600.1
Synonym Sb01g032050
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ATP-dependent protease, putative, expressed
UniProt A0A1B6QMF0
Pfam PF13371 PF13920 PF13414 PF02190
Panther DB PTHR23327 PTHR23327:SF9
NCBI CDD KOG4159; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004176ATP-dependent peptidase activity


Orthologs (automatic annotation)
TAIR AT1G18660 : zinc finger (C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os07g32560.1 : ATP-dependent protease, putative, expressed
MaizeGDB (Corn) Zm00025a002952
Brachypodium KQK14414
Barley HORVU4Hr1G045760.10 , HORVU4Hr1G045760.1 , HORVU4Hr1G045760.2 , HORVU4Hr1G045760.3 , HORVU4Hr1G045760.5 , HORVU4Hr1G045760.6 , HORVU4Hr1G045760.7 , HORVU4Hr1G045760.8 , HORVU4Hr1G045760.9
Wheat TraesCS4D02G155700 , TraesCS4A02G162000 , TraesCS4B02G151200
Populus PNT09858 , PNT09859 , PNT09856 , PNT09857


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cDNA sequences
Sobic.001G331600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
3 Sobic.004G153900 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
4 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
5 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
7 Sobic.007G227100 expressed protein -
8 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
9 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
10 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
11 Sobic.010G104700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
12 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
13 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
14 Sobic.004G035900 expressed protein -
15 Sobic.004G322600 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain(PubMedID : 26465154)@protein kinase domain containing protein, expressed -
16 Sobic.002G293500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sialin, putative, expressed -
17 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III
18 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
19 Sobic.007G121300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
20 Sobic.007G058100 light-mediated development protein DET1, putative, expressed K10571: de-etiolated-1


Gene co-expression network
sample Sobic001G331600 Sobic001G331600 Sobic001G485100 Sobic001G485100 Sobic001G331600--Sobic001G485100 Sobic004G128900 Sobic004G128900 Sobic001G331600--Sobic004G128900 Sobic004G153900 Sobic004G153900 Sobic001G331600--Sobic004G153900 Sobic002G161400 Sobic002G161400 Sobic001G331600--Sobic002G161400 Sobic001G046000 Sobic001G046000 Sobic001G331600--Sobic001G046000 Sobic004G312600 Sobic004G312600 Sobic001G331600--Sobic004G312600 Sobic007G227100 Sobic007G227100 Sobic001G331600--Sobic007G227100 Sobic006G191500 Sobic006G191500 Sobic001G331600--Sobic006G191500 Sobic004G344600 Sobic004G344600 Sobic001G331600--Sobic004G344600 Sobic001G485100--Sobic006G191500 Sobic001G485100--Sobic002G161400 Sobic003G380200 Sobic003G380200 Sobic001G485100--Sobic003G380200 Sobic003G186800 Sobic003G186800 Sobic001G485100--Sobic003G186800 Sobic001G485100--Sobic001G046000 Sobic001G485100--Sobic001G331600 Sobic003G228300 Sobic003G228300 Sobic001G485100--Sobic003G228300 Sobic009G225600 Sobic009G225600 Sobic001G485100--Sobic009G225600 Sobic001G485100--Sobic004G344600 Sobic004G128900--Sobic002G161400 Sobic004G128900--Sobic004G153900 Sobic004G128900--Sobic006G191500 Sobic006G235400 Sobic006G235400 Sobic004G128900--Sobic006G235400 Sobic006G161500 Sobic006G161500 Sobic004G128900--Sobic006G161500 Sobic004G128900--Sobic004G344600 Sobic004G128900--Sobic003G380200 Sobic004G128900--Sobic001G331600 Sobic004G128900--Sobic001G485100 Sobic004G153900--Sobic004G128900 Sobic004G153900--Sobic002G161400 Sobic010G104700 Sobic010G104700 Sobic004G153900--Sobic010G104700 Sobic004G153900--Sobic001G046000 Sobic004G153900--Sobic001G331600 Sobic004G153900--Sobic006G191500 Sobic004G153900--Sobic001G485100 Sobic008G149100 Sobic008G149100 Sobic004G153900--Sobic008G149100 Sobic004G153900--Sobic004G344600 Sobic002G161400--Sobic006G191500 Sobic002G161400--Sobic004G344600 Sobic002G161400--Sobic004G128900 Sobic003G304300 Sobic003G304300 Sobic002G161400--Sobic003G304300 Sobic002G161400--Sobic001G485100 Sobic002G161400--Sobic004G153900 Sobic003G339200 Sobic003G339200 Sobic002G161400--Sobic003G339200 Sobic002G161400--Sobic003G380200 Sobic001G112900 Sobic001G112900 Sobic002G161400--Sobic001G112900 Sobic001G046000--Sobic009G225600 Sobic001G046000--Sobic001G485100 Sobic001G046000--Sobic010G104700 Sobic002G047400 Sobic002G047400 Sobic001G046000--Sobic002G047400 Sobic001G046000--Sobic003G186800 Sobic010G101000 Sobic010G101000 Sobic001G046000--Sobic010G101000 Sobic006G090100 Sobic006G090100 Sobic001G046000--Sobic006G090100 Sobic001G046000--Sobic004G153900 Sobic001G046000--Sobic006G191500 Sobic004G312600--Sobic007G227100 Sobic004G127800 Sobic004G127800 Sobic004G312600--Sobic004G127800 Sobic008G038500 Sobic008G038500 Sobic004G312600--Sobic008G038500 Sobic004G312600--Sobic001G331600 Sobic002G382700 Sobic002G382700 Sobic004G312600--Sobic002G382700 Sobic002G293500 Sobic002G293500 Sobic004G312600--Sobic002G293500 Sobic001G077300 Sobic001G077300 Sobic004G312600--Sobic001G077300 Sobic005G106600 Sobic005G106600 Sobic004G312600--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic004G312600--Sobic003G220100 Sobic007G227100--Sobic004G312600 Sobic007G227100--Sobic004G127800 Sobic007G227100--Sobic001G077300 Sobic007G227100--Sobic001G331600 Sobic007G227100--Sobic008G038500 Sobic007G227100--Sobic002G382700 Sobic007G227100--Sobic006G235400 Sobic003G341300 Sobic003G341300 Sobic007G227100--Sobic003G341300 Sobic007G227100--Sobic001G485100 Sobic006G191500--Sobic002G161400 Sobic006G191500--Sobic003G380200 Sobic006G191500--Sobic001G485100 Sobic006G191500--Sobic003G304300 Sobic006G191500--Sobic004G128900 Sobic006G191500--Sobic004G344600 Sobic006G191500--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic006G191500--Sobic010G100900 Sobic006G191500--Sobic001G046000 Sobic004G344600--Sobic002G161400 Sobic004G344600--Sobic001G112900 Sobic004G344600--Sobic003G339200 Sobic004G344600--Sobic003G304300 Sobic004G344600--Sobic006G191500 Sobic004G344600--Sobic010G104700 Sobic004G344600--Sobic001G485100 Sobic004G344600--Sobic004G128900 Sobic009G246400 Sobic009G246400 Sobic004G344600--Sobic009G246400
Octagon: transcription factors


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