Gene annotation
Transcriptome id Sobic.007G227100.1
Synonym Sb07g029190
Functional annotation expressed protein
UniProt C5YJR7
Pfam PF07766
Panther DB PTHR14009 PTHR14009:SF9
NCBI CDD KOG1043; Ca2+-binding transmembrane protein LETM1/MRS7
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G11560 : LETM1-like protein
RAP-DB (Rice) LOC_Os08g37610.1 : expressed protein
MaizeGDB (Corn) Zm00025a004921
Brachypodium KQJ98710 , KQJ98708 , KQJ98709 , KQJ98707
Barley HORVU7Hr1G069090.2 , HORVU7Hr1G069090.1 , HORVU7Hr1G069090.7 , HORVU7Hr1G069090.6 , HORVU7Hr1G069090.5 , HORVU7Hr1G069090.4 , HORVU7Hr1G069090.9 , HORVU7Hr1G069090.8 , HORVU7Hr1G069090.13 , HORVU7Hr1G069090.12 , HORVU7Hr1G069090.11 , HORVU7Hr1G069090.10 , HORVU7Hr1G069090.16 , HORVU7Hr1G069090.15 , HORVU7Hr1G069090.14
Wheat TraesCS7B02G184300 , TraesCS7B02G184300 , TraesCS7B02G184300 , TraesCS7B02G184300 , TraesCS7B02G184300 , TraesCS7B02G184300 , TraesCS7B02G184300 , TraesCS7B02G184300 , TraesCS7B02G184300 , TraesCS7A02G293500 , TraesCS7A02G293500 , TraesCS7A02G293500 , TraesCS7B02G184300 , TraesCS7D02G287300
Populus PNT32788 , PNT32786 , PNT32787


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
2 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
3 Sobic.001G077300 thioredoxin, putative, expressed -
4 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
5 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III
6 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
7 Sobic.006G235400 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
8 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.007G058100 light-mediated development protein DET1, putative, expressed K10571: de-etiolated-1
11 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
12 Sobic.003G003450 - K01177: beta-amylase
13 Sobic.004G322600 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain(PubMedID : 26465154)@protein kinase domain containing protein, expressed -
14 Sobic.002G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@integral membrane transporter family protein, putative, expressed -
15 Sobic.002G293500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sialin, putative, expressed -
16 Sobic.003G409700 rieske domain containing protein, expressed -
17 Sobic.009G194500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.003G271400 chloride transporter, chloride channel family, putative, expressed -
19 Sobic.007G157300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
20 Sobic.006G161500 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G


Gene co-expression network
sample Sobic007G227100 Sobic007G227100 Sobic004G312600 Sobic004G312600 Sobic007G227100--Sobic004G312600 Sobic004G127800 Sobic004G127800 Sobic007G227100--Sobic004G127800 Sobic001G077300 Sobic001G077300 Sobic007G227100--Sobic001G077300 Sobic001G331600 Sobic001G331600 Sobic007G227100--Sobic001G331600 Sobic008G038500 Sobic008G038500 Sobic007G227100--Sobic008G038500 Sobic002G382700 Sobic002G382700 Sobic007G227100--Sobic002G382700 Sobic006G235400 Sobic006G235400 Sobic007G227100--Sobic006G235400 Sobic003G341300 Sobic003G341300 Sobic007G227100--Sobic003G341300 Sobic001G485100 Sobic001G485100 Sobic007G227100--Sobic001G485100 Sobic004G312600--Sobic007G227100 Sobic004G312600--Sobic004G127800 Sobic004G312600--Sobic008G038500 Sobic004G312600--Sobic001G331600 Sobic004G312600--Sobic002G382700 Sobic002G293500 Sobic002G293500 Sobic004G312600--Sobic002G293500 Sobic004G312600--Sobic001G077300 Sobic005G106600 Sobic005G106600 Sobic004G312600--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic004G312600--Sobic003G220100 Sobic004G127800--Sobic007G227100 Sobic004G127800--Sobic001G077300 Sobic006G235300 Sobic006G235300 Sobic004G127800--Sobic006G235300 Sobic004G127800--Sobic004G312600 Sobic004G127800--Sobic006G235400 Sobic006G090100 Sobic006G090100 Sobic004G127800--Sobic006G090100 Sobic004G127800--Sobic001G331600 Sobic006G191500 Sobic006G191500 Sobic004G127800--Sobic006G191500 Sobic009G073900 Sobic009G073900 Sobic004G127800--Sobic009G073900 Sobic001G077300--Sobic009G073900 Sobic001G077300--Sobic006G090100 Sobic001G077300--Sobic006G235400 Sobic001G077300--Sobic004G127800 Sobic001G359300 Sobic001G359300 Sobic001G077300--Sobic001G359300 Sobic009G093100 Sobic009G093100 Sobic001G077300--Sobic009G093100 Sobic001G077300--Sobic003G341300 Sobic006G212800 Sobic006G212800 Sobic001G077300--Sobic006G212800 Sobic003G003450 Sobic003G003450 Sobic001G077300--Sobic003G003450 Sobic001G331600--Sobic001G485100 Sobic004G128900 Sobic004G128900 Sobic001G331600--Sobic004G128900 Sobic004G153900 Sobic004G153900 Sobic001G331600--Sobic004G153900 Sobic002G161400 Sobic002G161400 Sobic001G331600--Sobic002G161400 Sobic001G046000 Sobic001G046000 Sobic001G331600--Sobic001G046000 Sobic001G331600--Sobic004G312600 Sobic001G331600--Sobic007G227100 Sobic001G331600--Sobic006G191500 Sobic004G344600 Sobic004G344600 Sobic001G331600--Sobic004G344600 Sobic008G038500--Sobic004G312600 Sobic008G038500--Sobic007G227100 Sobic009G194500 Sobic009G194500 Sobic008G038500--Sobic009G194500 Sobic002G119100 Sobic002G119100 Sobic008G038500--Sobic002G119100 Sobic004G322600 Sobic004G322600 Sobic008G038500--Sobic004G322600 Sobic008G038500--Sobic002G382700 Sobic007G058100 Sobic007G058100 Sobic008G038500--Sobic007G058100 Sobic001G244600 Sobic001G244600 Sobic008G038500--Sobic001G244600 Sobic004G322700 Sobic004G322700 Sobic008G038500--Sobic004G322700 Sobic001G207800 Sobic001G207800 Sobic002G382700--Sobic001G207800 Sobic001G258200 Sobic001G258200 Sobic002G382700--Sobic001G258200 Sobic002G382700--Sobic006G090100 Sobic002G382700--Sobic003G341300 Sobic001G283100 Sobic001G283100 Sobic002G382700--Sobic001G283100 Sobic002G382700--Sobic007G058100 Sobic002G382700--Sobic001G077300 Sobic002G162400 Sobic002G162400 Sobic002G382700--Sobic002G162400 Sobic002G382700--Sobic007G227100 Sobic010G231300 Sobic010G231300 Sobic006G235400--Sobic010G231300 Sobic006G235400--Sobic001G077300 Sobic006G235400--Sobic004G128900 Sobic006G235400--Sobic003G341300 Sobic003G409700 Sobic003G409700 Sobic006G235400--Sobic003G409700 Sobic008G129900 Sobic008G129900 Sobic006G235400--Sobic008G129900 Sobic006G161500 Sobic006G161500 Sobic006G235400--Sobic006G161500 Sobic003G380200 Sobic003G380200 Sobic006G235400--Sobic003G380200 Sobic001G180200 Sobic001G180200 Sobic006G235400--Sobic001G180200 Sobic003G341300--Sobic001G180200 Sobic007G157300 Sobic007G157300 Sobic003G341300--Sobic007G157300 Sobic003G341300--Sobic001G283100 Sobic003G341300--Sobic003G409700 Sobic003G341300--Sobic006G235400 Sobic003G341300--Sobic002G162400 Sobic003G341300--Sobic001G077300 Sobic003G341300--Sobic006G090100 Sobic003G094100 Sobic003G094100 Sobic003G341300--Sobic003G094100 Sobic001G485100--Sobic006G191500 Sobic001G485100--Sobic002G161400 Sobic001G485100--Sobic003G380200 Sobic003G186800 Sobic003G186800 Sobic001G485100--Sobic003G186800 Sobic001G485100--Sobic001G046000 Sobic001G485100--Sobic001G331600 Sobic003G228300 Sobic003G228300 Sobic001G485100--Sobic003G228300 Sobic009G225600 Sobic009G225600 Sobic001G485100--Sobic009G225600 Sobic001G485100--Sobic004G344600
Octagon: transcription factors


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