Gene annotation
Transcriptome id Sobic.003G271400.1
Synonym ATCLC-E, CLC-E, Sb03g032360, CLCE
Functional annotation chloride transporter, chloride channel family, putative, expressed
UniProt A0A1B6Q5L4
Pfam PF00571 PF00654
Panther DB PTHR11689 PTHR11689:SF14
NCBI CDD KOG0475; Cl- channel CLC-3 and related proteins (CLC superfamily)
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006821chloride transport GO:0005247voltage-gated chloride channel activity


Orthologs (automatic annotation)
TAIR AT4G35440 : chloride channel E
RAP-DB (Rice) LOC_Os01g50860.1 : chloride transporter, chloride channel family, putative, expressed
MaizeGDB (Corn) Zm00025a027860
Brachypodium KQK09387 , KQK09386
Barley HORVU3Hr1G066240.20 , HORVU3Hr1G066240.21 , HORVU3Hr1G066240.17 , HORVU3Hr1G066240.16 , HORVU3Hr1G066240.15 , HORVU3Hr1G066240.14 , HORVU3Hr1G066240.13 , HORVU3Hr1G066240.12 , HORVU3Hr1G066240.11 , HORVU3Hr1G066240.10 , HORVU3Hr1G066240.19 , HORVU3Hr1G066240.18 , HORVU3Hr1G066240.9 , HORVU3Hr1G066240.8 , HORVU3Hr1G066240.7 , HORVU3Hr1G066240.6 , HORVU3Hr1G066240.5 , HORVU3Hr1G066240.4 , HORVU3Hr1G066240.3 , HORVU3Hr1G066240.2 , HORVU3Hr1G066240.1
Wheat TraesCS3D02G254500 , TraesCS3D02G254500 , TraesCS3A02G253600 , TraesCS3A02G253600 , TraesCS3A02G253600 , TraesCS3B02G285500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G227100 expressed protein -
2 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
3 Sobic.004G069000 expressed protein -
4 Sobic.003G003450 - K01177: beta-amylase
5 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
6 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
7 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III
8 Sobic.004G151300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF803 domain containing, putative, expressed -
9 Sobic.010G150100 expressed protein -
10 Sobic.001G194300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fringe-related protein, putative, expressed -
11 Sobic.007G058100 light-mediated development protein DET1, putative, expressed K10571: de-etiolated-1
12 Sobic.004G355700 C2 domain containing protein, putative, expressed -
13 Sobic.007G140700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed K00131: glyceraldehyde-3-phosphate dehydrogenase (NADP+)
14 Sobic.001G077300 thioredoxin, putative, expressed -
15 Sobic.001G345100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
16 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
17 Sobic.002G341000 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
18 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
19 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
20 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic003G271400 Sobic003G271400 Sobic007G227100 Sobic007G227100 Sobic003G271400--Sobic007G227100 Sobic004G312600 Sobic004G312600 Sobic003G271400--Sobic004G312600 Sobic004G069000 Sobic004G069000 Sobic003G271400--Sobic004G069000 Sobic003G003450 Sobic003G003450 Sobic003G271400--Sobic003G003450 Sobic004G337400 Sobic004G337400 Sobic003G271400--Sobic004G337400 Sobic004G127800 Sobic004G127800 Sobic003G271400--Sobic004G127800 Sobic008G038500 Sobic008G038500 Sobic003G271400--Sobic008G038500 Sobic004G151300 Sobic004G151300 Sobic003G271400--Sobic004G151300 Sobic010G150100 Sobic010G150100 Sobic003G271400--Sobic010G150100 Sobic007G227100--Sobic004G312600 Sobic007G227100--Sobic004G127800 Sobic001G077300 Sobic001G077300 Sobic007G227100--Sobic001G077300 Sobic001G331600 Sobic001G331600 Sobic007G227100--Sobic001G331600 Sobic007G227100--Sobic008G038500 Sobic002G382700 Sobic002G382700 Sobic007G227100--Sobic002G382700 Sobic006G235400 Sobic006G235400 Sobic007G227100--Sobic006G235400 Sobic003G341300 Sobic003G341300 Sobic007G227100--Sobic003G341300 Sobic001G485100 Sobic001G485100 Sobic007G227100--Sobic001G485100 Sobic004G312600--Sobic007G227100 Sobic004G312600--Sobic004G127800 Sobic004G312600--Sobic008G038500 Sobic004G312600--Sobic001G331600 Sobic004G312600--Sobic002G382700 Sobic002G293500 Sobic002G293500 Sobic004G312600--Sobic002G293500 Sobic004G312600--Sobic001G077300 Sobic005G106600 Sobic005G106600 Sobic004G312600--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic004G312600--Sobic003G220100 Sobic004G069000--Sobic003G271400 Sobic001G528800 Sobic001G528800 Sobic004G069000--Sobic001G528800 Sobic001G345100 Sobic001G345100 Sobic004G069000--Sobic001G345100 Sobic008G033000 Sobic008G033000 Sobic004G069000--Sobic008G033000 Sobic005G206500 Sobic005G206500 Sobic004G069000--Sobic005G206500 Sobic010G085100 Sobic010G085100 Sobic004G069000--Sobic010G085100 Sobic007G136200 Sobic007G136200 Sobic004G069000--Sobic007G136200 Sobic001G536700 Sobic001G536700 Sobic004G069000--Sobic001G536700 Sobic001G378100 Sobic001G378100 Sobic004G069000--Sobic001G378100 Sobic009G073900 Sobic009G073900 Sobic003G003450--Sobic009G073900 Sobic003G003450--Sobic001G077300 Sobic001G509200 Sobic001G509200 Sobic003G003450--Sobic001G509200 Sobic006G213700 Sobic006G213700 Sobic003G003450--Sobic006G213700 Sobic002G081400 Sobic002G081400 Sobic003G003450--Sobic002G081400 Sobic006G232600 Sobic006G232600 Sobic003G003450--Sobic006G232600 Sobic006G090100 Sobic006G090100 Sobic003G003450--Sobic006G090100 Sobic007G087100 Sobic007G087100 Sobic003G003450--Sobic007G087100 Sobic001G207800 Sobic001G207800 Sobic003G003450--Sobic001G207800 Sobic004G337400--Sobic007G136200 Sobic004G337400--Sobic001G378100 Sobic004G337400--Sobic006G232600 Sobic004G019800 Sobic004G019800 Sobic004G337400--Sobic004G019800 Sobic003G077700 Sobic003G077700 Sobic004G337400--Sobic003G077700 Sobic010G002700 Sobic010G002700 Sobic004G337400--Sobic010G002700 Sobic004G337400--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic004G337400--Sobic005G084500 Sobic010G043800 Sobic010G043800 Sobic004G337400--Sobic010G043800 Sobic004G127800--Sobic007G227100 Sobic004G127800--Sobic001G077300 Sobic006G235300 Sobic006G235300 Sobic004G127800--Sobic006G235300 Sobic004G127800--Sobic004G312600 Sobic004G127800--Sobic006G235400 Sobic004G127800--Sobic006G090100 Sobic004G127800--Sobic001G331600 Sobic006G191500 Sobic006G191500 Sobic004G127800--Sobic006G191500 Sobic004G127800--Sobic009G073900 Sobic008G038500--Sobic004G312600 Sobic008G038500--Sobic007G227100 Sobic009G194500 Sobic009G194500 Sobic008G038500--Sobic009G194500 Sobic002G119100 Sobic002G119100 Sobic008G038500--Sobic002G119100 Sobic004G322600 Sobic004G322600 Sobic008G038500--Sobic004G322600 Sobic008G038500--Sobic002G382700 Sobic007G058100 Sobic007G058100 Sobic008G038500--Sobic007G058100 Sobic001G244600 Sobic001G244600 Sobic008G038500--Sobic001G244600 Sobic004G322700 Sobic004G322700 Sobic008G038500--Sobic004G322700 Sobic004G151300--Sobic010G150100 Sobic008G167600 Sobic008G167600 Sobic004G151300--Sobic008G167600 Sobic004G151300--Sobic001G345100 Sobic004G151300--Sobic006G090100 Sobic004G151300--Sobic004G312600 Sobic004G151300--Sobic001G207800 Sobic004G151300--Sobic001G331600 Sobic004G151300--Sobic002G382700 Sobic004G151300--Sobic007G227100 Sobic010G150100--Sobic004G151300 Sobic010G150100--Sobic004G312600 Sobic010G150100--Sobic001G331600 Sobic010G150100--Sobic001G345100 Sobic004G143300 Sobic004G143300 Sobic010G150100--Sobic004G143300 Sobic010G150100--Sobic004G127800 Sobic002G043800 Sobic002G043800 Sobic010G150100--Sobic002G043800 Sobic010G150100--Sobic007G227100 Sobic010G150100--Sobic003G003450
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.