Gene annotation
Transcriptome id Sobic.001G194300.3,Sobic.001G194300.2,Sobic.001G194300.1
Synonym Sb01g017110
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
fringe-related protein, putative, expressed
UniProt A0A1B6QJT7 , A0A1Z5S6F6
Pfam PF02434
Panther DB PTHR10811 PTHR10811:SF5
NCBI CDD KOG2246; Galactosyltransferases
KEGG Orthology -
Gene Ontology GO:0016757; transferase activity, transferring glycosyl groups GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT1G33250 : Protein of unknown function (DUF604)
RAP-DB (Rice) LOC_Os10g37260.1 : fringe-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a017423 , Zm00025a006300 , Zm00025a006301
Brachypodium KQJ97460 , KQJ97461 , PNT67717 , KQJ97459
Barley HORVU5Hr1G057060.1 , HORVU5Hr1G057060.3 , HORVU5Hr1G057060.2 , HORVU5Hr1G057060.4 , HORVU3Hr1G098900.1 , HORVU3Hr1G098900.2 , HORVU4Hr1G001540.1 , HORVU2Hr1G026980.1 , HORVU2Hr1G026980.2 , HORVU2Hr1G100940.2 , HORVU2Hr1G100940.1 , HORVU6Hr1G074990.1 , HORVU6Hr1G074990.3 , HORVU6Hr1G074990.2 , HORVU3Hr1G093770.3 , HORVU3Hr1G093770.2 , HORVU3Hr1G093770.1 , HORVU1Hr1G035090.1 , HORVU1Hr1G035090.2 , HORVU4Hr1G001540.2
Wheat TraesCS1D02G178600 , TraesCS1B02G200100 , TraesCS1A02G180400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G271400 chloride transporter, chloride channel family, putative, expressed -
2 Sobic.001G244600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KIP1, putative, expressed -
3 Sobic.003G021100 expressed protein -
4 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
5 Sobic.010G275700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
6 Sobic.007G140700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed K00131: glyceraldehyde-3-phosphate dehydrogenase (NADP+)
7 Sobic.004G189800 ABC1 family domain containing protein, putative, expressed -
8 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
9 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III
10 Sobic.001G333500 chaperone protein clpB 1, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
11 Sobic.004G322700 - -
12 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
13 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
14 Sobic.002G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@integral membrane transporter family protein, putative, expressed -
15 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
16 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
17 Sobic.005G206500 sodium/calcium exchanger protein, putative, expressed K03452: magnesium/proton exchanger
18 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
19 Sobic.003G166200 expressed protein -
20 Sobic.001G352400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G194300 Sobic001G194300 Sobic003G271400 Sobic003G271400 Sobic001G194300--Sobic003G271400 Sobic001G244600 Sobic001G244600 Sobic001G194300--Sobic001G244600 Sobic003G021100 Sobic003G021100 Sobic001G194300--Sobic003G021100 Sobic004G281800 Sobic004G281800 Sobic001G194300--Sobic004G281800 Sobic010G275700 Sobic010G275700 Sobic001G194300--Sobic010G275700 Sobic007G140700 Sobic007G140700 Sobic001G194300--Sobic007G140700 Sobic004G189800 Sobic004G189800 Sobic001G194300--Sobic004G189800 Sobic002G382700 Sobic002G382700 Sobic001G194300--Sobic002G382700 Sobic008G038500 Sobic008G038500 Sobic001G194300--Sobic008G038500 Sobic007G227100 Sobic007G227100 Sobic003G271400--Sobic007G227100 Sobic004G312600 Sobic004G312600 Sobic003G271400--Sobic004G312600 Sobic004G069000 Sobic004G069000 Sobic003G271400--Sobic004G069000 Sobic003G003450 Sobic003G003450 Sobic003G271400--Sobic003G003450 Sobic004G337400 Sobic004G337400 Sobic003G271400--Sobic004G337400 Sobic004G127800 Sobic004G127800 Sobic003G271400--Sobic004G127800 Sobic003G271400--Sobic008G038500 Sobic004G151300 Sobic004G151300 Sobic003G271400--Sobic004G151300 Sobic010G150100 Sobic010G150100 Sobic003G271400--Sobic010G150100 Sobic008G129900 Sobic008G129900 Sobic001G244600--Sobic008G129900 Sobic010G104800 Sobic010G104800 Sobic001G244600--Sobic010G104800 Sobic006G161500 Sobic006G161500 Sobic001G244600--Sobic006G161500 Sobic009G256100 Sobic009G256100 Sobic001G244600--Sobic009G256100 Sobic001G073300 Sobic001G073300 Sobic001G244600--Sobic001G073300 Sobic007G058100 Sobic007G058100 Sobic001G244600--Sobic007G058100 Sobic001G217900 Sobic001G217900 Sobic001G244600--Sobic001G217900 Sobic001G244600--Sobic008G038500 Sobic010G231300 Sobic010G231300 Sobic001G244600--Sobic010G231300 Sobic003G021100--Sobic010G275700 Sobic005G101200 Sobic005G101200 Sobic003G021100--Sobic005G101200 Sobic003G021100--Sobic004G281800 Sobic003G021100--Sobic004G189800 Sobic009G038900 Sobic009G038900 Sobic003G021100--Sobic009G038900 Sobic010G251700 Sobic010G251700 Sobic003G021100--Sobic010G251700 Sobic010G085100 Sobic010G085100 Sobic003G021100--Sobic010G085100 Sobic004G027600 Sobic004G027600 Sobic003G021100--Sobic004G027600 Sobic008G130000 Sobic008G130000 Sobic003G021100--Sobic008G130000 Sobic004G281800--Sobic009G038900 Sobic004G281800--Sobic005G101200 Sobic001G352400 Sobic001G352400 Sobic004G281800--Sobic001G352400 Sobic004G281800--Sobic010G275700 Sobic004G281800--Sobic003G021100 Sobic004G281800--Sobic002G382700 Sobic005G106600 Sobic005G106600 Sobic004G281800--Sobic005G106600 Sobic004G281800--Sobic004G312600 Sobic003G220100 Sobic003G220100 Sobic004G281800--Sobic003G220100 Sobic010G275700--Sobic003G021100 Sobic010G275700--Sobic005G101200 Sobic010G275700--Sobic004G281800 Sobic010G275700--Sobic001G352400 Sobic010G275700--Sobic004G189800 Sobic010G275700--Sobic002G382700 Sobic001G333800 Sobic001G333800 Sobic010G275700--Sobic001G333800 Sobic002G119100 Sobic002G119100 Sobic010G275700--Sobic002G119100 Sobic010G275700--Sobic009G038900 Sobic003G341300 Sobic003G341300 Sobic007G140700--Sobic003G341300 Sobic002G162400 Sobic002G162400 Sobic007G140700--Sobic002G162400 Sobic007G140700--Sobic002G382700 Sobic009G194500 Sobic009G194500 Sobic007G140700--Sobic009G194500 Sobic007G140700--Sobic010G231300 Sobic001G258200 Sobic001G258200 Sobic007G140700--Sobic001G258200 Sobic001G077300 Sobic001G077300 Sobic007G140700--Sobic001G077300 Sobic003G409700 Sobic003G409700 Sobic007G140700--Sobic003G409700 Sobic007G140700--Sobic001G244600 Sobic004G189800--Sobic005G101200 Sobic004G189800--Sobic001G258200 Sobic004G189800--Sobic004G027600 Sobic004G189800--Sobic009G256100 Sobic003G185900 Sobic003G185900 Sobic004G189800--Sobic003G185900 Sobic005G068700 Sobic005G068700 Sobic004G189800--Sobic005G068700 Sobic002G404800 Sobic002G404800 Sobic004G189800--Sobic002G404800 Sobic004G189800--Sobic002G382700 Sobic008G033000 Sobic008G033000 Sobic004G189800--Sobic008G033000 Sobic001G207800 Sobic001G207800 Sobic002G382700--Sobic001G207800 Sobic002G382700--Sobic001G258200 Sobic006G090100 Sobic006G090100 Sobic002G382700--Sobic006G090100 Sobic002G382700--Sobic003G341300 Sobic001G283100 Sobic001G283100 Sobic002G382700--Sobic001G283100 Sobic002G382700--Sobic007G058100 Sobic002G382700--Sobic001G077300 Sobic002G382700--Sobic002G162400 Sobic002G382700--Sobic007G227100 Sobic008G038500--Sobic004G312600 Sobic008G038500--Sobic007G227100 Sobic008G038500--Sobic009G194500 Sobic008G038500--Sobic002G119100 Sobic004G322600 Sobic004G322600 Sobic008G038500--Sobic004G322600 Sobic008G038500--Sobic002G382700 Sobic008G038500--Sobic007G058100 Sobic008G038500--Sobic001G244600 Sobic004G322700 Sobic004G322700 Sobic008G038500--Sobic004G322700
Octagon: transcription factors


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