Gene annotation
Transcriptome id Sobic.001G333500.1
Synonym APG6, Sb01g032210, CLPB-P, CLPB3
Functional annotation chaperone protein clpB 1, putative, expressed
UniProt C5WWH8
Pfam PF07728 PF00004 PF10431 PF02861
Panther DB PTHR11638 PTHR11638:SF121
NCBI CDD -
KEGG Orthology K03695; ATP-dependent Clp protease ATP-binding subunit ClpB
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT5G15450 : casein lytic proteinase B3
RAP-DB (Rice) LOC_Os03g31300.1 : chaperone protein clpB 1, putative, expressed
MaizeGDB (Corn) Zm00025a002910 , Zm00025a038767 , Zm00025a052203 , Zm00025a017172
Brachypodium KQK14431
Barley HORVU4Hr1G090440.4 , HORVU4Hr1G090440.3 , HORVU4Hr1G090440.2 , HORVU4Hr1G090440.1
Wheat TraesCS5A02G547300 , TraesCSU02G131300 , TraesCS4B02G380800
Populus -


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cDNA sequences
Sobic.001G333500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
2 Sobic.002G193800 transporter family protein, putative, expressed -
3 Sobic.003G219200 MEE18, putative, expressed -
4 Sobic.004G069000 expressed protein -
5 Sobic.005G199400 glutathione synthetase, chloroplast precursor, putative, expressed K01920: glutathione synthase
6 Sobic.001G194300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fringe-related protein, putative, expressed -
7 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -
8 Sobic.K031800 inositol-1-monophosphatase, putative, expressed K01082: cysQ, MET22, 3'(2'), 5'-bisphosphate nucleotidase
9 Sobic.004G238200 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
10 Sobic.003G264800 expressed protein -
11 Sobic.003G271400 chloride transporter, chloride channel family, putative, expressed -
12 Sobic.010G035400 expressed protein -
13 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
14 Sobic.007G136200 expressed protein -
15 Sobic.003G077700 DUF647 domain containing protein, putative, expressed -
16 Sobic.002G223700 OsRhmbd15 - Putative Rhomboid homologue, expressed -
17 Sobic.009G132000 expressed protein -
18 Sobic.001G536700 expressed protein -
19 Sobic.003G301300 PPR repeat domain containing protein, putative, expressed -
20 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3


Gene co-expression network
sample Sobic001G333500 Sobic001G333500 Sobic004G337400 Sobic004G337400 Sobic001G333500--Sobic004G337400 Sobic002G193800 Sobic002G193800 Sobic001G333500--Sobic002G193800 Sobic003G219200 Sobic003G219200 Sobic001G333500--Sobic003G219200 Sobic004G069000 Sobic004G069000 Sobic001G333500--Sobic004G069000 Sobic005G199400 Sobic005G199400 Sobic001G333500--Sobic005G199400 Sobic001G194300 Sobic001G194300 Sobic001G333500--Sobic001G194300 Sobic006G102000 Sobic006G102000 Sobic001G333500--Sobic006G102000 SobicK031800 SobicK031800 Sobic001G333500--SobicK031800 Sobic004G238200 Sobic004G238200 Sobic001G333500--Sobic004G238200 Sobic007G136200 Sobic007G136200 Sobic004G337400--Sobic007G136200 Sobic001G378100 Sobic001G378100 Sobic004G337400--Sobic001G378100 Sobic006G232600 Sobic006G232600 Sobic004G337400--Sobic006G232600 Sobic004G019800 Sobic004G019800 Sobic004G337400--Sobic004G019800 Sobic003G077700 Sobic003G077700 Sobic004G337400--Sobic003G077700 Sobic010G002700 Sobic010G002700 Sobic004G337400--Sobic010G002700 Sobic005G106600 Sobic005G106600 Sobic004G337400--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic004G337400--Sobic005G084500 Sobic010G043800 Sobic010G043800 Sobic004G337400--Sobic010G043800 Sobic009G113800 Sobic009G113800 Sobic002G193800--Sobic009G113800 Sobic006G207800 Sobic006G207800 Sobic002G193800--Sobic006G207800 Sobic004G054400 Sobic004G054400 Sobic002G193800--Sobic004G054400 Sobic004G274100 Sobic004G274100 Sobic002G193800--Sobic004G274100 Sobic004G331700 Sobic004G331700 Sobic002G193800--Sobic004G331700 Sobic002G193800--Sobic001G333500 Sobic001G168250 Sobic001G168250 Sobic002G193800--Sobic001G168250 Sobic009G237100 Sobic009G237100 Sobic002G193800--Sobic009G237100 Sobic007G140800 Sobic007G140800 Sobic002G193800--Sobic007G140800 Sobic003G219200--SobicK031800 Sobic010G035400 Sobic010G035400 Sobic003G219200--Sobic010G035400 Sobic002G275300 Sobic002G275300 Sobic003G219200--Sobic002G275300 Sobic003G219200--Sobic006G102000 Sobic003G219200--Sobic009G237100 Sobic007G103400 Sobic007G103400 Sobic003G219200--Sobic007G103400 Sobic009G237000 Sobic009G237000 Sobic003G219200--Sobic009G237000 Sobic003G219200--Sobic006G207800 Sobic001G100000 Sobic001G100000 Sobic003G219200--Sobic001G100000 Sobic003G271400 Sobic003G271400 Sobic004G069000--Sobic003G271400 Sobic001G528800 Sobic001G528800 Sobic004G069000--Sobic001G528800 Sobic001G345100 Sobic001G345100 Sobic004G069000--Sobic001G345100 Sobic008G033000 Sobic008G033000 Sobic004G069000--Sobic008G033000 Sobic005G206500 Sobic005G206500 Sobic004G069000--Sobic005G206500 Sobic010G085100 Sobic010G085100 Sobic004G069000--Sobic010G085100 Sobic004G069000--Sobic007G136200 Sobic001G536700 Sobic001G536700 Sobic004G069000--Sobic001G536700 Sobic004G069000--Sobic001G378100 Sobic001G136800 Sobic001G136800 Sobic005G199400--Sobic001G136800 Sobic002G072400 Sobic002G072400 Sobic005G199400--Sobic002G072400 Sobic002G131500 Sobic002G131500 Sobic005G199400--Sobic002G131500 Sobic005G199400--Sobic004G238200 Sobic003G264800 Sobic003G264800 Sobic005G199400--Sobic003G264800 Sobic005G084800 Sobic005G084800 Sobic005G199400--Sobic005G084800 Sobic005G199400--Sobic001G333500 Sobic003G186900 Sobic003G186900 Sobic005G199400--Sobic003G186900 Sobic002G349100 Sobic002G349100 Sobic005G199400--Sobic002G349100 Sobic001G194300--Sobic003G271400 Sobic001G244600 Sobic001G244600 Sobic001G194300--Sobic001G244600 Sobic003G021100 Sobic003G021100 Sobic001G194300--Sobic003G021100 Sobic004G281800 Sobic004G281800 Sobic001G194300--Sobic004G281800 Sobic010G275700 Sobic010G275700 Sobic001G194300--Sobic010G275700 Sobic007G140700 Sobic007G140700 Sobic001G194300--Sobic007G140700 Sobic004G189800 Sobic004G189800 Sobic001G194300--Sobic004G189800 Sobic002G382700 Sobic002G382700 Sobic001G194300--Sobic002G382700 Sobic008G038500 Sobic008G038500 Sobic001G194300--Sobic008G038500 Sobic007G108900 Sobic007G108900 Sobic006G102000--Sobic007G108900 Sobic006G102000--Sobic009G237000 Sobic001G289500 Sobic001G289500 Sobic006G102000--Sobic001G289500 Sobic003G094100 Sobic003G094100 Sobic006G102000--Sobic003G094100 Sobic010G181300 Sobic010G181300 Sobic006G102000--Sobic010G181300 Sobic006G102000--Sobic002G275300 Sobic001G491000 Sobic001G491000 Sobic006G102000--Sobic001G491000 Sobic006G102000--Sobic006G207800 Sobic004G303200 Sobic004G303200 Sobic006G102000--Sobic004G303200 SobicK031800--Sobic003G219200 Sobic008G188600 Sobic008G188600 SobicK031800--Sobic008G188600 Sobic003G387100 Sobic003G387100 SobicK031800--Sobic003G387100 Sobic009G175500 Sobic009G175500 SobicK031800--Sobic009G175500 Sobic005G149400 Sobic005G149400 SobicK031800--Sobic005G149400 Sobic004G336200 Sobic004G336200 SobicK031800--Sobic004G336200 SobicK031800--Sobic010G035400 SobicK031800--Sobic002G275300 SobicK031800--Sobic006G102000 Sobic003G232700 Sobic003G232700 Sobic004G238200--Sobic003G232700 Sobic004G207400 Sobic004G207400 Sobic004G238200--Sobic004G207400 Sobic001G500600 Sobic001G500600 Sobic004G238200--Sobic001G500600 Sobic004G238200--Sobic005G084500 Sobic001G516901 Sobic001G516901 Sobic004G238200--Sobic001G516901 Sobic004G238200--Sobic002G072400 Sobic007G005400 Sobic007G005400 Sobic004G238200--Sobic007G005400 Sobic006G197300 Sobic006G197300 Sobic004G238200--Sobic006G197300 Sobic004G238200--Sobic006G232600
Octagon: transcription factors


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