Gene annotation
Transcriptome id Sobic.002G193800.1,Sobic.002G193800.3,Sobic.002G193800.2
Synonym Sb02g024060
Functional annotation transporter family protein, putative, expressed
UniProt A0A1B6QCD0 , A0A1W0W4X1 , A0A1W0W4Y9
Pfam PF07690
Panther DB PTHR23503 PTHR23503:SF8 PTHR23500 PTHR23500:SF118
NCBI CDD KOG0254; Predicted transporter (major facilitator superfamily)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G05030 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os09g23110.1 : transporter family protein, putative, expressed
MaizeGDB (Corn) Zm00025a046878
Brachypodium KQJ90133
Barley HORVU5Hr1G060220.24 , HORVU5Hr1G060220.25 , HORVU5Hr1G060220.26 , HORVU5Hr1G060220.27 , HORVU5Hr1G060220.20 , HORVU5Hr1G060220.21 , HORVU5Hr1G060220.22 , HORVU5Hr1G060220.23 , HORVU5Hr1G060220.28 , HORVU5Hr1G060220.29 , HORVU5Hr1G060220.9 , HORVU5Hr1G060220.8 , HORVU5Hr1G060220.5 , HORVU5Hr1G060220.4 , HORVU5Hr1G060220.7 , HORVU5Hr1G060220.6 , HORVU5Hr1G060220.1 , HORVU5Hr1G060220.3 , HORVU5Hr1G060220.2 , HORVU5Hr1G060220.19 , HORVU5Hr1G060220.18 , HORVU5Hr1G060220.11 , HORVU5Hr1G060220.10 , HORVU5Hr1G060220.13 , HORVU5Hr1G060220.15 , HORVU5Hr1G060220.14 , HORVU5Hr1G060220.17 , HORVU5Hr1G060220.16 , HORVU5Hr1G060220.42 , HORVU5Hr1G060220.43 , HORVU5Hr1G060220.40 , HORVU5Hr1G060220.37 , HORVU5Hr1G060220.36 , HORVU5Hr1G060220.35 , HORVU5Hr1G060220.34 , HORVU5Hr1G060220.33 , HORVU5Hr1G060220.32 , HORVU5Hr1G060220.31 , HORVU5Hr1G060220.30 , HORVU5Hr1G060220.38 , HORVU5Hr1G060220.12
Wheat TraesCS5D02G209100 , TraesCS5D02G209100 , TraesCS5A02G202700 , TraesCS5A02G202700 , TraesCS5B02G201200 , TraesCS5B02G201200 , TraesCS5B02G201200
Populus -


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cDNA sequences
Sobic.002G193800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G113800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
2 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
3 Sobic.004G054400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
4 Sobic.004G274100 expressed protein -
5 Sobic.004G331700 aspartate aminotransferase 5(PubMedID : 26465154)@-(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed K00811: aspartate aminotransferase, chloroplastic
6 Sobic.001G333500 chaperone protein clpB 1, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
7 Sobic.001G168250 - -
8 Sobic.009G237100 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
9 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)
10 Sobic.003G160200 multidrug resistance-associated protein, putative, expressed K05665: ATP-binding cassette, subfamily C (CFTR/MRP), member 1
11 Sobic.008G130000 PPR repeat domain containing protein, putative, expressed -
12 Sobic.008G115900 mitochondrial carrier protein, putative, expressed -
13 Sobic.007G009200 adenosine monophosphate kinase(PubMedID : 26465154)@AMP kinase(PubMedID : 26976818)@adenylate kinase, putative, expressed K00939: adk, adenylate kinase
14 Sobic.010G035400 expressed protein -
15 Sobic.008G188600 glyoxalase family protein, putative, expressed -
16 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
17 Sobic.004G027600 expressed protein -
18 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
19 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -


Gene co-expression network
sample Sobic002G193800 Sobic002G193800 Sobic009G113800 Sobic009G113800 Sobic002G193800--Sobic009G113800 Sobic006G207800 Sobic006G207800 Sobic002G193800--Sobic006G207800 Sobic004G054400 Sobic004G054400 Sobic002G193800--Sobic004G054400 Sobic004G274100 Sobic004G274100 Sobic002G193800--Sobic004G274100 Sobic004G331700 Sobic004G331700 Sobic002G193800--Sobic004G331700 Sobic001G333500 Sobic001G333500 Sobic002G193800--Sobic001G333500 Sobic001G168250 Sobic001G168250 Sobic002G193800--Sobic001G168250 Sobic009G237100 Sobic009G237100 Sobic002G193800--Sobic009G237100 Sobic007G140800 Sobic007G140800 Sobic002G193800--Sobic007G140800 Sobic009G113800--Sobic006G207800 Sobic009G113800--Sobic007G140800 Sobic001G102800 Sobic001G102800 Sobic009G113800--Sobic001G102800 Sobic009G113800--Sobic004G274100 Sobic009G113800--Sobic002G193800 Sobic009G113800--Sobic004G331700 Sobic003G303700 Sobic003G303700 Sobic009G113800--Sobic003G303700 Sobic009G113800--Sobic009G237100 Sobic007G009200 Sobic007G009200 Sobic009G113800--Sobic007G009200 Sobic006G207800--Sobic001G102800 Sobic006G207800--Sobic009G237100 Sobic006G207800--Sobic007G009200 Sobic003G387100 Sobic003G387100 Sobic006G207800--Sobic003G387100 Sobic009G043000 Sobic009G043000 Sobic006G207800--Sobic009G043000 Sobic010G035400 Sobic010G035400 Sobic006G207800--Sobic010G035400 Sobic003G431700 Sobic003G431700 Sobic006G207800--Sobic003G431700 Sobic010G201700 Sobic010G201700 Sobic006G207800--Sobic010G201700 Sobic006G238200 Sobic006G238200 Sobic006G207800--Sobic006G238200 Sobic001G124800 Sobic001G124800 Sobic004G054400--Sobic001G124800 Sobic001G309300 Sobic001G309300 Sobic004G054400--Sobic001G309300 Sobic004G054400--Sobic003G387100 Sobic001G032700 Sobic001G032700 Sobic004G054400--Sobic001G032700 Sobic008G001900 Sobic008G001900 Sobic004G054400--Sobic008G001900 Sobic001G516901 Sobic001G516901 Sobic004G054400--Sobic001G516901 Sobic001G512500 Sobic001G512500 Sobic004G054400--Sobic001G512500 Sobic004G336000 Sobic004G336000 Sobic004G054400--Sobic004G336000 Sobic006G010900 Sobic006G010900 Sobic004G054400--Sobic006G010900 Sobic004G274100--Sobic007G140800 Sobic004G274100--Sobic003G303700 Sobic002G098800 Sobic002G098800 Sobic004G274100--Sobic002G098800 Sobic004G274100--Sobic009G113800 Sobic004G274100--Sobic001G102800 Sobic008G021300 Sobic008G021300 Sobic004G274100--Sobic008G021300 Sobic004G274100--Sobic010G201700 Sobic001G069000 Sobic001G069000 Sobic004G274100--Sobic001G069000 Sobic008G188600 Sobic008G188600 Sobic004G274100--Sobic008G188600 Sobic004G331700--Sobic001G102800 Sobic004G331700--Sobic006G207800 Sobic004G331700--Sobic001G309300 Sobic004G331700--Sobic009G237100 Sobic007G052400 Sobic007G052400 Sobic004G331700--Sobic007G052400 Sobic004G331700--Sobic007G009200 Sobic010G005500 Sobic010G005500 Sobic004G331700--Sobic010G005500 Sobic004G331700--Sobic003G387100 Sobic009G059300 Sobic009G059300 Sobic004G331700--Sobic009G059300 Sobic004G337400 Sobic004G337400 Sobic001G333500--Sobic004G337400 Sobic001G333500--Sobic002G193800 Sobic003G219200 Sobic003G219200 Sobic001G333500--Sobic003G219200 Sobic004G069000 Sobic004G069000 Sobic001G333500--Sobic004G069000 Sobic005G199400 Sobic005G199400 Sobic001G333500--Sobic005G199400 Sobic001G194300 Sobic001G194300 Sobic001G333500--Sobic001G194300 Sobic006G102000 Sobic006G102000 Sobic001G333500--Sobic006G102000 SobicK031800 SobicK031800 Sobic001G333500--SobicK031800 Sobic004G238200 Sobic004G238200 Sobic001G333500--Sobic004G238200 Sobic003G160200 Sobic003G160200 Sobic001G168250--Sobic003G160200 Sobic008G130000 Sobic008G130000 Sobic001G168250--Sobic008G130000 Sobic001G168250--Sobic002G193800 Sobic001G168250--Sobic004G274100 Sobic010G176200 Sobic010G176200 Sobic001G168250--Sobic010G176200 Sobic001G168250--Sobic009G113800 Sobic001G308200 Sobic001G308200 Sobic001G168250--Sobic001G308200 Sobic001G168250--Sobic009G237100 Sobic007G123500 Sobic007G123500 Sobic001G168250--Sobic007G123500 Sobic009G237100--Sobic007G009200 Sobic009G237100--Sobic006G207800 Sobic009G237100--Sobic006G238200 Sobic001G100000 Sobic001G100000 Sobic009G237100--Sobic001G100000 Sobic001G491000 Sobic001G491000 Sobic009G237100--Sobic001G491000 Sobic002G275300 Sobic002G275300 Sobic009G237100--Sobic002G275300 Sobic009G237100--Sobic010G035400 Sobic009G237100--Sobic001G102800 Sobic010G181300 Sobic010G181300 Sobic009G237100--Sobic010G181300 Sobic006G077400 Sobic006G077400 Sobic007G140800--Sobic006G077400 Sobic007G140800--Sobic003G303700 Sobic007G140800--Sobic010G201700 Sobic003G024300 Sobic003G024300 Sobic007G140800--Sobic003G024300 Sobic010G153900 Sobic010G153900 Sobic007G140800--Sobic010G153900 Sobic001G329400 Sobic001G329400 Sobic007G140800--Sobic001G329400 Sobic007G140800--Sobic007G009200 Sobic004G125700 Sobic004G125700 Sobic007G140800--Sobic004G125700 Sobic007G140800--Sobic009G237100
Octagon: transcription factors


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