Gene annotation
Transcriptome id Sobic.001G168250.2,Sobic.001G168250.1
Synonym -
Functional annotation -
UniProt A0A1Z5S611
Pfam PF00248
Panther DB PTHR11732 PTHR11732:SF255
NCBI CDD KOG1575; Voltage-gated shaker-like K+ channel, subunit beta/KCNAB
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G04420 : NAD(P)-linked oxidoreductase superfamily protein
RAP-DB (Rice) LOC_Os03g41510.1,LOC_Os03g41510.2 : oxidoreductase, aldo/keto reductase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a007412
Brachypodium KQK14204 , KQK14203 , KQK14202 , PNT74445 , PNT74447 , PNT74446
Barley HORVU4Hr1G013530.10 , HORVU4Hr1G013530.11 , HORVU4Hr1G013530.8 , HORVU4Hr1G013530.9 , HORVU4Hr1G013530.6 , HORVU4Hr1G013530.7 , HORVU4Hr1G013530.4 , HORVU4Hr1G013530.5 , HORVU4Hr1G013530.3 , HORVU4Hr1G013530.1 , HORVU4Hr1G013600.1 , HORVU4Hr1G013600.2 , HORVU4Hr1G013530.12
Wheat TraesCS4A02G235300 , TraesCS4D02G078600 , TraesCS4B02G079600 , TraesCS4B02G079400 , TraesCS4D02G078200 , TraesCS4A02G235500 , TraesCS4B02G079600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G160200 multidrug resistance-associated protein, putative, expressed K05665: ATP-binding cassette, subfamily C (CFTR/MRP), member 1
2 Sobic.008G130000 PPR repeat domain containing protein, putative, expressed -
3 Sobic.002G193800 transporter family protein, putative, expressed -
4 Sobic.004G274100 expressed protein -
5 Sobic.010G176200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.009G113800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
7 Sobic.001G308200 cytochrome P450 97B2, putative, expressed K09837: LUT1, carotenoid epsilon hydroxylase
8 Sobic.009G237100 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
9 Sobic.007G123500 sulfate transporter, putative, expressed K17470: sulfate transporter 1, high-affinity
10 Sobic.009G063100 Mitochondrial substrate carrier family protein(PubMedID : 26465154)@mitochondrial carrier protein, putative, expressed -
11 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
12 Sobic.008G115900 mitochondrial carrier protein, putative, expressed -
13 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)
14 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
15 Sobic.004G331700 aspartate aminotransferase 5(PubMedID : 26465154)@-(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed K00811: aspartate aminotransferase, chloroplastic
16 Sobic.001G100000 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
17 Sobic.005G149400 maf, putative, expressed K06287: septum formation protein
18 Sobic.010G188600 stromal membrane-associated protein, putative, expressed K12486: stromal membrane-associated protein
19 Sobic.003G021100 expressed protein -
20 Sobic.004G193700 ASC1, putative, expressed K04710: CERS1_2_3_4, ceramide synthetase


Gene co-expression network
sample Sobic001G168250 Sobic001G168250 Sobic003G160200 Sobic003G160200 Sobic001G168250--Sobic003G160200 Sobic008G130000 Sobic008G130000 Sobic001G168250--Sobic008G130000 Sobic002G193800 Sobic002G193800 Sobic001G168250--Sobic002G193800 Sobic004G274100 Sobic004G274100 Sobic001G168250--Sobic004G274100 Sobic010G176200 Sobic010G176200 Sobic001G168250--Sobic010G176200 Sobic009G113800 Sobic009G113800 Sobic001G168250--Sobic009G113800 Sobic001G308200 Sobic001G308200 Sobic001G168250--Sobic001G308200 Sobic009G237100 Sobic009G237100 Sobic001G168250--Sobic009G237100 Sobic007G123500 Sobic007G123500 Sobic001G168250--Sobic007G123500 Sobic003G160200--Sobic001G168250 Sobic003G160200--Sobic010G176200 Sobic003G160200--Sobic008G130000 Sobic003G160200--Sobic007G123500 Sobic003G160200--Sobic009G113800 Sobic003G160200--Sobic002G193800 Sobic008G115900 Sobic008G115900 Sobic003G160200--Sobic008G115900 Sobic003G160200--Sobic009G237100 Sobic004G356400 Sobic004G356400 Sobic003G160200--Sobic004G356400 Sobic008G130000--Sobic010G176200 Sobic008G130000--Sobic004G356400 Sobic008G130000--Sobic003G160200 Sobic003G021100 Sobic003G021100 Sobic008G130000--Sobic003G021100 Sobic010G275700 Sobic010G275700 Sobic008G130000--Sobic010G275700 Sobic001G303200 Sobic001G303200 Sobic008G130000--Sobic001G303200 Sobic008G130000--Sobic001G168250 Sobic003G229300 Sobic003G229300 Sobic008G130000--Sobic003G229300 Sobic001G333800 Sobic001G333800 Sobic008G130000--Sobic001G333800 Sobic002G193800--Sobic009G113800 Sobic006G207800 Sobic006G207800 Sobic002G193800--Sobic006G207800 Sobic004G054400 Sobic004G054400 Sobic002G193800--Sobic004G054400 Sobic002G193800--Sobic004G274100 Sobic004G331700 Sobic004G331700 Sobic002G193800--Sobic004G331700 Sobic001G333500 Sobic001G333500 Sobic002G193800--Sobic001G333500 Sobic002G193800--Sobic001G168250 Sobic002G193800--Sobic009G237100 Sobic007G140800 Sobic007G140800 Sobic002G193800--Sobic007G140800 Sobic004G274100--Sobic007G140800 Sobic003G303700 Sobic003G303700 Sobic004G274100--Sobic003G303700 Sobic002G098800 Sobic002G098800 Sobic004G274100--Sobic002G098800 Sobic004G274100--Sobic009G113800 Sobic001G102800 Sobic001G102800 Sobic004G274100--Sobic001G102800 Sobic008G021300 Sobic008G021300 Sobic004G274100--Sobic008G021300 Sobic010G201700 Sobic010G201700 Sobic004G274100--Sobic010G201700 Sobic001G069000 Sobic001G069000 Sobic004G274100--Sobic001G069000 Sobic008G188600 Sobic008G188600 Sobic004G274100--Sobic008G188600 Sobic010G176200--Sobic008G130000 Sobic003G313300 Sobic003G313300 Sobic010G176200--Sobic003G313300 Sobic004G347800 Sobic004G347800 Sobic010G176200--Sobic004G347800 Sobic010G176200--Sobic004G356400 Sobic010G176200--Sobic003G229300 Sobic010G176200--Sobic003G160200 Sobic001G017300 Sobic001G017300 Sobic010G176200--Sobic001G017300 Sobic010G176200--Sobic007G123500 Sobic010G176200--Sobic001G333800 Sobic009G113800--Sobic006G207800 Sobic009G113800--Sobic007G140800 Sobic009G113800--Sobic001G102800 Sobic009G113800--Sobic004G274100 Sobic009G113800--Sobic002G193800 Sobic009G113800--Sobic004G331700 Sobic009G113800--Sobic003G303700 Sobic009G113800--Sobic009G237100 Sobic007G009200 Sobic007G009200 Sobic009G113800--Sobic007G009200 Sobic001G309300 Sobic001G309300 Sobic001G308200--Sobic001G309300 Sobic010G255100 Sobic010G255100 Sobic001G308200--Sobic010G255100 Sobic006G106400 Sobic006G106400 Sobic001G308200--Sobic006G106400 Sobic006G010900 Sobic006G010900 Sobic001G308200--Sobic006G010900 Sobic008G073100 Sobic008G073100 Sobic001G308200--Sobic008G073100 Sobic006G256600 Sobic006G256600 Sobic001G308200--Sobic006G256600 Sobic001G126300 Sobic001G126300 Sobic001G308200--Sobic001G126300 Sobic004G336000 Sobic004G336000 Sobic001G308200--Sobic004G336000 Sobic004G011300 Sobic004G011300 Sobic001G308200--Sobic004G011300 Sobic009G237100--Sobic007G009200 Sobic009G237100--Sobic006G207800 Sobic006G238200 Sobic006G238200 Sobic009G237100--Sobic006G238200 Sobic001G100000 Sobic001G100000 Sobic009G237100--Sobic001G100000 Sobic001G491000 Sobic001G491000 Sobic009G237100--Sobic001G491000 Sobic002G275300 Sobic002G275300 Sobic009G237100--Sobic002G275300 Sobic010G035400 Sobic010G035400 Sobic009G237100--Sobic010G035400 Sobic009G237100--Sobic001G102800 Sobic010G181300 Sobic010G181300 Sobic009G237100--Sobic010G181300 Sobic004G120100 Sobic004G120100 Sobic007G123500--Sobic004G120100 Sobic007G123500--Sobic003G160200 Sobic007G123500--Sobic008G115900 Sobic007G123500--Sobic010G176200 Sobic005G084500 Sobic005G084500 Sobic007G123500--Sobic005G084500 Sobic007G123500--Sobic008G130000 Sobic007G136200 Sobic007G136200 Sobic007G123500--Sobic007G136200 Sobic001G516901 Sobic001G516901 Sobic007G123500--Sobic001G516901 Sobic007G123500--Sobic001G333800
Octagon: transcription factors


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