Gene annotation
Transcriptome id Sobic.004G193700.1
Synonym Sb04g024150, LAG13
Functional annotation ASC1, putative, expressed
UniProt C5XVT2
Pfam PF03798
Panther DB PTHR12560 PTHR12560:SF15
NCBI CDD KOG1607; Protein transporter of the TRAM (translocating chain-associating membrane) superfamily
KEGG Orthology K04710; CERS1_2_3_4, ceramide synthetase
Gene Ontology GO:0016021; integral component of membrane GO:0005783endoplasmic reticulum


Orthologs (automatic annotation)
TAIR AT1G13580 : LAG1 longevity assurance homolog 3
RAP-DB (Rice) LOC_Os02g37080.1 : ASC1, putative, expressed
MaizeGDB (Corn) Zm00025a020861 , Zm00025a031765
Brachypodium PNT67286 , KQK00058 , KQK00059
Barley -
Wheat TraesCS6D02G269600 , TraesCS6A02G289300 , TraesCS6B02G319400
Populus -


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cDNA sequences
Sobic.004G193700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G091600 methyltransferase, putative, expressed -
2 Sobic.003G262200 E3 ubiquitin ligase, putative, expressed K16276: K16276, zinc finger protein-like protein
3 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
4 Sobic.006G092000 expressed protein K18172: COX assembly mitochondrial protein 2
5 Sobic.003G253600 protein kinase domain containing protein, expressed -
6 Sobic.003G119600 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.005G059800 RNA recognition motif containing protein, putative, expressed K14407: CSTF2, cleavage stimulation factor subunit 2
8 Sobic.001G085600 ABC transporter, ATP-binding protein, putative, expressed -
9 Sobic.006G185100 ranBP1 domain containing protein, expressed K14295: NUP50, nuclear pore complex protein Nup50
10 Sobic.007G136200 expressed protein -
11 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
12 Sobic.005G100600 bZIP transcription factor domain containing protein, expressed -
13 Sobic.003G247400 OsCttP1 - Putative C-terminal processing peptidase homologue, expressed -
14 Sobic.003G011300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
15 Sobic.002G257750 - -
16 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
17 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
18 Sobic.003G247500 expressed protein -
19 Sobic.010G032900 transketolase, putative, expressed K01662: 1-deoxy-D-xylulose-5-phosphate synthase
20 Sobic.008G115900 mitochondrial carrier protein, putative, expressed -


Gene co-expression network
sample Sobic004G193700 Sobic004G193700 Sobic002G091600 Sobic002G091600 Sobic004G193700--Sobic002G091600 Sobic003G262200 Sobic003G262200 Sobic004G193700--Sobic003G262200 Sobic003G229300 Sobic003G229300 Sobic004G193700--Sobic003G229300 Sobic006G092000 Sobic006G092000 Sobic004G193700--Sobic006G092000 Sobic003G253600 Sobic003G253600 Sobic004G193700--Sobic003G253600 Sobic003G119600 Sobic003G119600 Sobic004G193700--Sobic003G119600 Sobic005G059800 Sobic005G059800 Sobic004G193700--Sobic005G059800 Sobic001G085600 Sobic001G085600 Sobic004G193700--Sobic001G085600 Sobic006G185100 Sobic006G185100 Sobic004G193700--Sobic006G185100 Sobic002G091600--Sobic004G193700 Sobic003G110800 Sobic003G110800 Sobic002G091600--Sobic003G110800 Sobic007G136200 Sobic007G136200 Sobic002G091600--Sobic007G136200 Sobic002G091600--Sobic003G119600 Sobic001G097100 Sobic001G097100 Sobic002G091600--Sobic001G097100 Sobic001G530900 Sobic001G530900 Sobic002G091600--Sobic001G530900 Sobic005G084500 Sobic005G084500 Sobic002G091600--Sobic005G084500 Sobic009G215500 Sobic009G215500 Sobic002G091600--Sobic009G215500 Sobic005G106600 Sobic005G106600 Sobic002G091600--Sobic005G106600 Sobic003G262200--Sobic003G229300 Sobic003G262200--Sobic006G185100 Sobic003G262200--Sobic004G193700 Sobic003G262200--Sobic003G119600 Sobic008G115900 Sobic008G115900 Sobic003G262200--Sobic008G115900 Sobic003G262200--Sobic002G091600 Sobic003G262200--Sobic003G253600 Sobic003G155100 Sobic003G155100 Sobic003G262200--Sobic003G155100 Sobic001G355800 Sobic001G355800 Sobic003G262200--Sobic001G355800 Sobic003G191700 Sobic003G191700 Sobic003G229300--Sobic003G191700 Sobic010G176200 Sobic010G176200 Sobic003G229300--Sobic010G176200 Sobic006G133900 Sobic006G133900 Sobic003G229300--Sobic006G133900 Sobic004G042200 Sobic004G042200 Sobic003G229300--Sobic004G042200 Sobic001G169900 Sobic001G169900 Sobic003G229300--Sobic001G169900 Sobic003G229300--Sobic008G115900 Sobic007G198300 Sobic007G198300 Sobic003G229300--Sobic007G198300 Sobic003G229300--Sobic003G262200 Sobic003G222900 Sobic003G222900 Sobic003G229300--Sobic003G222900 Sobic006G092000--Sobic003G110800 Sobic005G100600 Sobic005G100600 Sobic006G092000--Sobic005G100600 Sobic006G092000--Sobic004G193700 Sobic006G092000--Sobic005G059800 Sobic006G092000--Sobic003G229300 Sobic006G173600 Sobic006G173600 Sobic006G092000--Sobic006G173600 Sobic006G092000--Sobic008G115900 Sobic006G092000--Sobic002G091600 Sobic001G516901 Sobic001G516901 Sobic006G092000--Sobic001G516901 Sobic003G253600--Sobic006G185100 Sobic002G257750 Sobic002G257750 Sobic003G253600--Sobic002G257750 Sobic003G253600--Sobic003G119600 Sobic002G344000 Sobic002G344000 Sobic003G253600--Sobic002G344000 Sobic001G332500 Sobic001G332500 Sobic003G253600--Sobic001G332500 Sobic003G316500 Sobic003G316500 Sobic003G253600--Sobic003G316500 Sobic003G253600--Sobic003G155100 Sobic003G253600--Sobic005G059800 Sobic008G044100 Sobic008G044100 Sobic003G253600--Sobic008G044100 Sobic009G201300 Sobic009G201300 Sobic003G119600--Sobic009G201300 Sobic001G439300 Sobic001G439300 Sobic003G119600--Sobic001G439300 Sobic002G325300 Sobic002G325300 Sobic003G119600--Sobic002G325300 Sobic004G244900 Sobic004G244900 Sobic003G119600--Sobic004G244900 Sobic003G119600--Sobic002G257750 Sobic003G119600--Sobic005G106600 Sobic004G356700 Sobic004G356700 Sobic003G119600--Sobic004G356700 Sobic003G119600--Sobic003G253600 Sobic003G354600 Sobic003G354600 Sobic003G119600--Sobic003G354600 Sobic010G032900 Sobic010G032900 Sobic005G059800--Sobic010G032900 Sobic002G294800 Sobic002G294800 Sobic005G059800--Sobic002G294800 Sobic005G059800--Sobic006G185100 Sobic001G194200 Sobic001G194200 Sobic005G059800--Sobic001G194200 Sobic005G059800--Sobic003G155100 Sobic003G011300 Sobic003G011300 Sobic005G059800--Sobic003G011300 Sobic005G059800--Sobic008G044100 Sobic008G070800 Sobic008G070800 Sobic005G059800--Sobic008G070800 Sobic003G398700 Sobic003G398700 Sobic005G059800--Sobic003G398700 Sobic001G085600--Sobic005G100600 Sobic001G085600--Sobic004G193700 Sobic001G261545 Sobic001G261545 Sobic001G085600--Sobic001G261545 Sobic001G085600--Sobic006G092000 Sobic002G309900 Sobic002G309900 Sobic001G085600--Sobic002G309900 Sobic001G203400 Sobic001G203400 Sobic001G085600--Sobic001G203400 Sobic002G218500 Sobic002G218500 Sobic001G085600--Sobic002G218500 Sobic005G198000 Sobic005G198000 Sobic001G085600--Sobic005G198000 Sobic003G319800 Sobic003G319800 Sobic001G085600--Sobic003G319800 Sobic006G185100--Sobic002G325300 Sobic006G185100--Sobic003G253600 Sobic006G185100--Sobic002G257750 Sobic004G140600 Sobic004G140600 Sobic006G185100--Sobic004G140600 Sobic001G392300 Sobic001G392300 Sobic006G185100--Sobic001G392300 Sobic006G185100--Sobic005G059800 Sobic006G185100--Sobic003G119600 Sobic001G080700 Sobic001G080700 Sobic006G185100--Sobic001G080700 Sobic006G185100--Sobic008G070800
Octagon: transcription factors


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