Gene annotation
Transcriptome id Sobic.003G229300.4,Sobic.003G229300.2,Sobic.003G229300.3,Sobic.003G229300.1
Synonym Sb03g028730, SSP4
Functional annotation NLI interacting factor-like phosphatase, putative, expressed
UniProt A0A1B6Q4W9 , A0A1B6Q4T3 , C5XEF7
Pfam PF03031
Panther DB PTHR12210 PTHR12210:SF71
NCBI CDD KOG1605; TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation)
KEGG Orthology K17616; CTD small phosphatase-like protein 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G46410 : SCP1-like small phosphatase 4
RAP-DB (Rice) LOC_Os01g43870.1 : NLI interacting factor-like phosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a028329 , Zm00025a038621
Brachypodium KQK08853 , KQK08856 , KQK08854 , KQK08855 , KQK08858 , PNT72443 , PNT72442
Barley HORVU3Hr1G056170.2 , HORVU3Hr1G056170.3 , HORVU3Hr1G056170.6 , HORVU3Hr1G056170.7 , HORVU3Hr1G056170.10 , HORVU3Hr1G056170.11 , HORVU3Hr1G056170.4 , HORVU3Hr1G056170.5 , HORVU3Hr1G056170.8 , HORVU3Hr1G056170.9 , HORVU3Hr1G056170.1
Wheat TraesCS3D02G225700 , TraesCS3A02G227900 , TraesCS3A02G227900 , TraesCS3A02G227900 , TraesCS3D02G225700 , TraesCS3D02G225700 , TraesCS3D02G225700 , TraesCS3B02G256600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G191700 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
2 Sobic.010G176200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G133900 NIN, putative, expressed -
4 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
5 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
6 Sobic.008G115900 mitochondrial carrier protein, putative, expressed -
7 Sobic.007G198300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
8 Sobic.003G262200 E3 ubiquitin ligase, putative, expressed K16276: K16276, zinc finger protein-like protein
9 Sobic.003G222900 OsFtsH9 FtsH protease, homologue of AtFtsH11, expressed K08955: ATP-dependent metalloprotease
10 Sobic.004G347800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
11 Sobic.004G118200 reticulon domain containing protein, putative, expressed -
12 Sobic.003G370700 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS1-18 - C2H2 zinc finger protein, expressed -
13 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
14 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
15 Sobic.003G247500 expressed protein -
16 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
17 Sobic.010G013800 START domain containing protein, expressed -
18 Sobic.003G313300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plus-3 domain containing protein, expressed -
19 Sobic.008G130000 PPR repeat domain containing protein, putative, expressed -
20 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein


Gene co-expression network
sample Sobic003G229300 Sobic003G229300 Sobic003G191700 Sobic003G191700 Sobic003G229300--Sobic003G191700 Sobic010G176200 Sobic010G176200 Sobic003G229300--Sobic010G176200 Sobic006G133900 Sobic006G133900 Sobic003G229300--Sobic006G133900 Sobic004G042200 Sobic004G042200 Sobic003G229300--Sobic004G042200 Sobic001G169900 Sobic001G169900 Sobic003G229300--Sobic001G169900 Sobic008G115900 Sobic008G115900 Sobic003G229300--Sobic008G115900 Sobic007G198300 Sobic007G198300 Sobic003G229300--Sobic007G198300 Sobic003G262200 Sobic003G262200 Sobic003G229300--Sobic003G262200 Sobic003G222900 Sobic003G222900 Sobic003G229300--Sobic003G222900 Sobic003G191700--Sobic004G042200 Sobic003G313300 Sobic003G313300 Sobic003G191700--Sobic003G313300 Sobic003G191700--Sobic006G133900 Sobic003G191700--Sobic003G229300 Sobic003G017100 Sobic003G017100 Sobic003G191700--Sobic003G017100 Sobic009G038900 Sobic009G038900 Sobic003G191700--Sobic009G038900 Sobic003G191700--Sobic007G198300 Sobic003G155100 Sobic003G155100 Sobic003G191700--Sobic003G155100 Sobic010G002700 Sobic010G002700 Sobic003G191700--Sobic010G002700 Sobic008G130000 Sobic008G130000 Sobic010G176200--Sobic008G130000 Sobic010G176200--Sobic003G313300 Sobic004G347800 Sobic004G347800 Sobic010G176200--Sobic004G347800 Sobic004G356400 Sobic004G356400 Sobic010G176200--Sobic004G356400 Sobic010G176200--Sobic003G229300 Sobic003G160200 Sobic003G160200 Sobic010G176200--Sobic003G160200 Sobic001G017300 Sobic001G017300 Sobic010G176200--Sobic001G017300 Sobic007G123500 Sobic007G123500 Sobic010G176200--Sobic007G123500 Sobic001G333800 Sobic001G333800 Sobic010G176200--Sobic001G333800 Sobic004G181600 Sobic004G181600 Sobic006G133900--Sobic004G181600 Sobic001G454500 Sobic001G454500 Sobic006G133900--Sobic001G454500 Sobic006G133900--Sobic003G155100 Sobic006G219600 Sobic006G219600 Sobic006G133900--Sobic006G219600 Sobic003G370700 Sobic003G370700 Sobic006G133900--Sobic003G370700 Sobic002G104100 Sobic002G104100 Sobic006G133900--Sobic002G104100 Sobic008G130100 Sobic008G130100 Sobic006G133900--Sobic008G130100 Sobic006G065600 Sobic006G065600 Sobic006G133900--Sobic006G065600 Sobic006G133900--Sobic003G191700 Sobic004G042200--Sobic009G038900 Sobic004G042200--Sobic010G002700 Sobic004G042200--Sobic003G191700 Sobic006G050700 Sobic006G050700 Sobic004G042200--Sobic006G050700 Sobic003G220100 Sobic003G220100 Sobic004G042200--Sobic003G220100 Sobic004G042200--Sobic003G155100 Sobic010G243900 Sobic010G243900 Sobic004G042200--Sobic010G243900 Sobic005G106600 Sobic005G106600 Sobic004G042200--Sobic005G106600 Sobic004G042200--Sobic006G133900 Sobic001G169900--Sobic010G002700 Sobic006G158100 Sobic006G158100 Sobic001G169900--Sobic006G158100 Sobic010G043800 Sobic010G043800 Sobic001G169900--Sobic010G043800 Sobic007G136200 Sobic007G136200 Sobic001G169900--Sobic007G136200 Sobic001G198100 Sobic001G198100 Sobic001G169900--Sobic001G198100 Sobic006G142600 Sobic006G142600 Sobic001G169900--Sobic006G142600 Sobic001G394800 Sobic001G394800 Sobic001G169900--Sobic001G394800 Sobic001G169900--Sobic001G017300 Sobic001G169900--Sobic003G017100 Sobic008G115900--Sobic007G136200 Sobic008G115900--Sobic006G158100 Sobic006G130300 Sobic006G130300 Sobic008G115900--Sobic006G130300 Sobic006G207800 Sobic006G207800 Sobic008G115900--Sobic006G207800 Sobic008G115900--Sobic004G356400 Sobic008G115900--Sobic001G017300 Sobic010G153900 Sobic010G153900 Sobic008G115900--Sobic010G153900 Sobic008G115900--Sobic003G229300 Sobic001G491000 Sobic001G491000 Sobic008G115900--Sobic001G491000 Sobic001G375100 Sobic001G375100 Sobic007G198300--Sobic001G375100 Sobic007G198300--Sobic003G155100 Sobic007G198300--Sobic008G130100 Sobic007G198300--Sobic003G191700 Sobic007G198300--Sobic009G038900 Sobic007G198300--Sobic003G229300 Sobic007G198300--Sobic006G219600 Sobic007G198300--Sobic006G133900 Sobic001G381600 Sobic001G381600 Sobic007G198300--Sobic001G381600 Sobic003G262200--Sobic003G229300 Sobic006G185100 Sobic006G185100 Sobic003G262200--Sobic006G185100 Sobic004G193700 Sobic004G193700 Sobic003G262200--Sobic004G193700 Sobic003G119600 Sobic003G119600 Sobic003G262200--Sobic003G119600 Sobic003G262200--Sobic008G115900 Sobic002G091600 Sobic002G091600 Sobic003G262200--Sobic002G091600 Sobic003G253600 Sobic003G253600 Sobic003G262200--Sobic003G253600 Sobic003G262200--Sobic003G155100 Sobic001G355800 Sobic001G355800 Sobic003G262200--Sobic001G355800 Sobic003G222900--Sobic003G229300 Sobic010G176550 Sobic010G176550 Sobic003G222900--Sobic010G176550 Sobic003G217700 Sobic003G217700 Sobic003G222900--Sobic003G217700 Sobic003G222900--Sobic003G017100 Sobic002G252800 Sobic002G252800 Sobic003G222900--Sobic002G252800 Sobic003G222900--Sobic001G198100 Sobic010G032900 Sobic010G032900 Sobic003G222900--Sobic010G032900 Sobic007G023200 Sobic007G023200 Sobic003G222900--Sobic007G023200 Sobic009G209300 Sobic009G209300 Sobic003G222900--Sobic009G209300
Octagon: transcription factors


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