Gene annotation
Transcriptome id Sobic.001G017300.1
Synonym Sb01g001680
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
RNA-binding protein containing a PIN domain, putative, expressed
UniProt C5WT10
Pfam PF05991
Panther DB PTHR34547
NCBI CDD -
KEGG Orthology K06962; uncharacterized protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02410 : -
RAP-DB (Rice) LOC_Os03g62610.1 : RNA-binding protein containing a PIN domain, putative, expressed
MaizeGDB (Corn) Zm00025a008979
Brachypodium KQK12190
Barley HORVU5Hr1G120240.1 , HORVU5Hr1G120240.2 , HORVU5Hr1G120240.3 , HORVU5Hr1G120240.4 , HORVU5Hr1G120240.5 , HORVU5Hr1G120240.6 , HORVU5Hr1G120240.7 , HORVU5Hr1G120240.8
Wheat TraesCS4A02G343400 , TraesCS5B02G531300 , TraesCS5B02G531300 , TraesCS5D02G529600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G158100 tRNA-dihydrouridine synthase, putative, expressed K05543: tRNA-dihydrouridine synthase 2
2 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G093800 GRAS family transcription factor domain containing protein, expressed -
4 Sobic.010G249700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.007G136200 expressed protein -
6 Sobic.003G276300 zinc knuckle domain containing protein, expressed -
7 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
8 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
9 Sobic.010G002700 expressed protein -
10 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
11 Sobic.005G206300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATA15 protein, putative, expressed -
12 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
13 Sobic.001G283100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed -
14 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
15 Sobic.003G220100 - -
16 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
17 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
18 Sobic.001G468700 expressed protein -
19 Sobic.003G313300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plus-3 domain containing protein, expressed -
20 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -


Gene co-expression network
sample Sobic001G017300 Sobic001G017300 Sobic006G158100 Sobic006G158100 Sobic001G017300--Sobic006G158100 Sobic004G356400 Sobic004G356400 Sobic001G017300--Sobic004G356400 Sobic006G093800 Sobic006G093800 Sobic001G017300--Sobic006G093800 Sobic010G249700 Sobic010G249700 Sobic001G017300--Sobic010G249700 Sobic007G136200 Sobic007G136200 Sobic001G017300--Sobic007G136200 Sobic003G276300 Sobic003G276300 Sobic001G017300--Sobic003G276300 Sobic005G101200 Sobic005G101200 Sobic001G017300--Sobic005G101200 Sobic001G169900 Sobic001G169900 Sobic001G017300--Sobic001G169900 Sobic010G002700 Sobic010G002700 Sobic001G017300--Sobic010G002700 Sobic006G158100--Sobic007G136200 Sobic006G158100--Sobic001G017300 Sobic001G258200 Sobic001G258200 Sobic006G158100--Sobic001G258200 Sobic001G504400 Sobic001G504400 Sobic006G158100--Sobic001G504400 Sobic003G094100 Sobic003G094100 Sobic006G158100--Sobic003G094100 Sobic010G043800 Sobic010G043800 Sobic006G158100--Sobic010G043800 Sobic010G067100 Sobic010G067100 Sobic006G158100--Sobic010G067100 Sobic006G158100--Sobic001G169900 Sobic003G185900 Sobic003G185900 Sobic006G158100--Sobic003G185900 Sobic004G356400--Sobic001G017300 Sobic004G356400--Sobic005G101200 Sobic004G356400--Sobic006G158100 Sobic004G356400--Sobic003G185900 Sobic007G105500 Sobic007G105500 Sobic004G356400--Sobic007G105500 Sobic001G303200 Sobic001G303200 Sobic004G356400--Sobic001G303200 Sobic009G237100 Sobic009G237100 Sobic004G356400--Sobic009G237100 Sobic004G189800 Sobic004G189800 Sobic004G356400--Sobic004G189800 Sobic004G356400--Sobic001G258200 Sobic006G093800--Sobic001G017300 Sobic006G093800--Sobic010G249700 Sobic006G093800--Sobic004G356400 Sobic001G134100 Sobic001G134100 Sobic006G093800--Sobic001G134100 Sobic006G093800--Sobic005G101200 Sobic010G085100 Sobic010G085100 Sobic006G093800--Sobic010G085100 Sobic006G093800--Sobic004G189800 Sobic004G027600 Sobic004G027600 Sobic006G093800--Sobic004G027600 Sobic006G093800--Sobic007G136200 Sobic010G249700--Sobic001G017300 Sobic010G249700--Sobic005G101200 Sobic010G249700--Sobic007G105500 Sobic010G249700--Sobic006G093800 Sobic009G256100 Sobic009G256100 Sobic010G249700--Sobic009G256100 Sobic010G255300 Sobic010G255300 Sobic010G249700--Sobic010G255300 Sobic003G282000 Sobic003G282000 Sobic010G249700--Sobic003G282000 Sobic002G382700 Sobic002G382700 Sobic010G249700--Sobic002G382700 Sobic010G249700--Sobic004G356400 Sobic007G136200--Sobic006G158100 Sobic007G136200--Sobic010G043800 Sobic007G136200--Sobic001G504400 Sobic007G136200--Sobic010G002700 Sobic007G103400 Sobic007G103400 Sobic007G136200--Sobic007G103400 Sobic007G136200--Sobic001G169900 Sobic004G337400 Sobic004G337400 Sobic007G136200--Sobic004G337400 Sobic007G108900 Sobic007G108900 Sobic007G136200--Sobic007G108900 Sobic001G378100 Sobic001G378100 Sobic007G136200--Sobic001G378100 Sobic003G276300--Sobic010G002700 Sobic003G276300--Sobic001G017300 Sobic003G017100 Sobic003G017100 Sobic003G276300--Sobic003G017100 Sobic003G247400 Sobic003G247400 Sobic003G276300--Sobic003G247400 Sobic006G142600 Sobic006G142600 Sobic003G276300--Sobic006G142600 Sobic003G276300--Sobic001G169900 Sobic003G276300--Sobic010G043800 Sobic001G198100 Sobic001G198100 Sobic003G276300--Sobic001G198100 Sobic003G276300--Sobic007G136200 Sobic005G101200--Sobic004G189800 Sobic005G068700 Sobic005G068700 Sobic005G101200--Sobic005G068700 Sobic002G404800 Sobic002G404800 Sobic005G101200--Sobic002G404800 Sobic005G101200--Sobic001G258200 Sobic009G038900 Sobic009G038900 Sobic005G101200--Sobic009G038900 Sobic005G101200--Sobic007G105500 Sobic005G101200--Sobic003G185900 Sobic005G101200--Sobic010G085100 Sobic004G281800 Sobic004G281800 Sobic005G101200--Sobic004G281800 Sobic001G169900--Sobic010G002700 Sobic001G169900--Sobic006G158100 Sobic001G169900--Sobic010G043800 Sobic001G169900--Sobic007G136200 Sobic001G169900--Sobic001G198100 Sobic001G169900--Sobic006G142600 Sobic001G394800 Sobic001G394800 Sobic001G169900--Sobic001G394800 Sobic001G169900--Sobic001G017300 Sobic001G169900--Sobic003G017100 Sobic010G002700--Sobic003G017100 Sobic010G002700--Sobic001G169900 Sobic005G118400 Sobic005G118400 Sobic010G002700--Sobic005G118400 Sobic010G002700--Sobic010G043800 Sobic010G002700--Sobic001G378100 Sobic010G002700--Sobic007G136200 Sobic010G002700--Sobic003G276300 Sobic010G002700--Sobic001G198100 Sobic001G530900 Sobic001G530900 Sobic010G002700--Sobic001G530900
Octagon: transcription factors


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