Gene annotation
Transcriptome id Sobic.003G220100.2
Synonym
Functional annotation -
UniProt A0A1W0VYG3
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G220100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
2 Sobic.001G333800 MYB family transcription factor, putative, expressed -
3 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
4 Sobic.007G058100 light-mediated development protein DET1, putative, expressed K10571: de-etiolated-1
5 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
6 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
7 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
8 Sobic.003G073800 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
9 Sobic.010G002700 expressed protein -
10 Sobic.006G065100 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
11 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
12 Sobic.001G359300 cytochrome P450, putative, expressed -
13 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
14 Sobic.001G077300 thioredoxin, putative, expressed -
15 Sobic.001G504400 expressed protein -
16 Sobic.006G133900 NIN, putative, expressed -
17 Sobic.007G227100 expressed protein -
18 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
19 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
20 Sobic.001G133000 expressed protein -


Gene co-expression network
sample Sobic003G220100 Sobic003G220100 Sobic005G106600 Sobic005G106600 Sobic003G220100--Sobic005G106600 Sobic001G333800 Sobic001G333800 Sobic003G220100--Sobic001G333800 Sobic004G312600 Sobic004G312600 Sobic003G220100--Sobic004G312600 Sobic007G058100 Sobic007G058100 Sobic003G220100--Sobic007G058100 Sobic009G038900 Sobic009G038900 Sobic003G220100--Sobic009G038900 Sobic001G378100 Sobic001G378100 Sobic003G220100--Sobic001G378100 Sobic001G169900 Sobic001G169900 Sobic003G220100--Sobic001G169900 Sobic003G073800 Sobic003G073800 Sobic003G220100--Sobic003G073800 Sobic010G002700 Sobic010G002700 Sobic003G220100--Sobic010G002700 Sobic005G106600--Sobic003G220100 Sobic005G106600--Sobic001G333800 Sobic005G106600--Sobic009G038900 Sobic001G133000 Sobic001G133000 Sobic005G106600--Sobic001G133000 Sobic005G106600--Sobic004G312600 Sobic005G106600--Sobic007G058100 Sobic007G136200 Sobic007G136200 Sobic005G106600--Sobic007G136200 Sobic006G219600 Sobic006G219600 Sobic005G106600--Sobic006G219600 Sobic005G106600--Sobic001G378100 Sobic001G359300 Sobic001G359300 Sobic001G333800--Sobic001G359300 Sobic001G333800--Sobic005G106600 Sobic009G093100 Sobic009G093100 Sobic001G333800--Sobic009G093100 Sobic006G090100 Sobic006G090100 Sobic001G333800--Sobic006G090100 Sobic001G303200 Sobic001G303200 Sobic001G333800--Sobic001G303200 Sobic001G333800--Sobic003G220100 Sobic001G333800--Sobic009G038900 Sobic009G073900 Sobic009G073900 Sobic001G333800--Sobic009G073900 Sobic001G077300 Sobic001G077300 Sobic001G333800--Sobic001G077300 Sobic007G227100 Sobic007G227100 Sobic004G312600--Sobic007G227100 Sobic004G127800 Sobic004G127800 Sobic004G312600--Sobic004G127800 Sobic008G038500 Sobic008G038500 Sobic004G312600--Sobic008G038500 Sobic001G331600 Sobic001G331600 Sobic004G312600--Sobic001G331600 Sobic002G382700 Sobic002G382700 Sobic004G312600--Sobic002G382700 Sobic002G293500 Sobic002G293500 Sobic004G312600--Sobic002G293500 Sobic004G312600--Sobic001G077300 Sobic004G312600--Sobic005G106600 Sobic004G312600--Sobic003G220100 Sobic001G263100 Sobic001G263100 Sobic007G058100--Sobic001G263100 Sobic001G217900 Sobic001G217900 Sobic007G058100--Sobic001G217900 Sobic004G082300 Sobic004G082300 Sobic007G058100--Sobic004G082300 Sobic001G258200 Sobic001G258200 Sobic007G058100--Sobic001G258200 Sobic003G341300 Sobic003G341300 Sobic007G058100--Sobic003G341300 Sobic008G129900 Sobic008G129900 Sobic007G058100--Sobic008G129900 Sobic004G143300 Sobic004G143300 Sobic007G058100--Sobic004G143300 Sobic009G256100 Sobic009G256100 Sobic007G058100--Sobic009G256100 Sobic001G345100 Sobic001G345100 Sobic007G058100--Sobic001G345100 Sobic004G281800 Sobic004G281800 Sobic009G038900--Sobic004G281800 Sobic005G101200 Sobic005G101200 Sobic009G038900--Sobic005G101200 Sobic009G038900--Sobic005G106600 Sobic005G068700 Sobic005G068700 Sobic009G038900--Sobic005G068700 Sobic004G042200 Sobic004G042200 Sobic009G038900--Sobic004G042200 Sobic009G038900--Sobic003G220100 Sobic009G038900--Sobic001G333800 Sobic009G038900--Sobic001G359300 Sobic010G085100 Sobic010G085100 Sobic009G038900--Sobic010G085100 Sobic001G378100--Sobic003G073800 Sobic001G378100--Sobic001G217900 Sobic001G504400 Sobic001G504400 Sobic001G378100--Sobic001G504400 Sobic001G378100--Sobic001G077300 Sobic001G540600 Sobic001G540600 Sobic001G378100--Sobic001G540600 Sobic001G536700 Sobic001G536700 Sobic001G378100--Sobic001G536700 Sobic006G232600 Sobic006G232600 Sobic001G378100--Sobic006G232600 Sobic009G170200 Sobic009G170200 Sobic001G378100--Sobic009G170200 Sobic001G378100--Sobic001G258200 Sobic001G169900--Sobic010G002700 Sobic006G158100 Sobic006G158100 Sobic001G169900--Sobic006G158100 Sobic010G043800 Sobic010G043800 Sobic001G169900--Sobic010G043800 Sobic001G169900--Sobic007G136200 Sobic001G198100 Sobic001G198100 Sobic001G169900--Sobic001G198100 Sobic006G142600 Sobic006G142600 Sobic001G169900--Sobic006G142600 Sobic001G394800 Sobic001G394800 Sobic001G169900--Sobic001G394800 Sobic001G017300 Sobic001G017300 Sobic001G169900--Sobic001G017300 Sobic003G017100 Sobic003G017100 Sobic001G169900--Sobic003G017100 Sobic003G073800--Sobic001G378100 Sobic003G073800--Sobic001G077300 Sobic001G180200 Sobic001G180200 Sobic003G073800--Sobic001G180200 Sobic009G207900 Sobic009G207900 Sobic003G073800--Sobic009G207900 Sobic003G073800--Sobic001G536700 Sobic003G073800--Sobic009G073900 Sobic003G073800--Sobic006G090100 Sobic003G073800--Sobic007G058100 Sobic002G206300 Sobic002G206300 Sobic003G073800--Sobic002G206300 Sobic010G002700--Sobic003G017100 Sobic010G002700--Sobic001G169900 Sobic005G118400 Sobic005G118400 Sobic010G002700--Sobic005G118400 Sobic010G002700--Sobic010G043800 Sobic010G002700--Sobic001G378100 Sobic010G002700--Sobic007G136200 Sobic003G276300 Sobic003G276300 Sobic010G002700--Sobic003G276300 Sobic010G002700--Sobic001G198100 Sobic001G530900 Sobic001G530900 Sobic010G002700--Sobic001G530900
Octagon: transcription factors


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