Gene annotation
Transcriptome id Sobic.009G038900.1
Synonym MPK16, Sb09g003280,SbMAPK6
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
highly upregulated during chilling in a chilling tolerant sorghum NSG (PubMedID : 29293808)
CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
UniProt A0A1B6P6E2
Pfam PF00069
Panther DB PTHR24055 PTHR24055:SF193
NCBI CDD -
KEGG Orthology K04371; ERK, mitogen-activated protein kinase 1/3
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G19010 : mitogen-activated protein kinase 16
RAP-DB (Rice) LOC_Os05g05160.1 : CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
MaizeGDB (Corn) Zm00025a055374 , Zm00025a036716 , Zm00025a044719 , Zm00025a015123
Brachypodium KQK07594 , KQK08860 , KQK08859
Barley HORVU1Hr1G018740.11 , HORVU1Hr1G018740.10 , HORVU1Hr1G018740.13 , HORVU1Hr1G018740.12 , HORVU1Hr1G018740.14 , HORVU1Hr1G018740.9 , HORVU1Hr1G018740.8 , HORVU1Hr1G018740.5 , HORVU1Hr1G018740.4 , HORVU1Hr1G018740.7 , HORVU1Hr1G018740.6 , HORVU1Hr1G018740.1 , HORVU1Hr1G018740.3 , HORVU1Hr1G018740.2
Wheat TraesCS1B02G104900 , TraesCS1A02G086500 , TraesCS7B02G246900 , TraesCS7B02G246900 , TraesCS7A02G335300 , TraesCS7A02G335300 , TraesCS7A02G335300 , TraesCS1D02G088000 , TraesCS1D02G088000 , TraesCS7B02G246900 , TraesCS7B02G246900 , TraesCS7D02G342800 , TraesCS7D02G342800 , TraesCS7D02G342800
Populus PNT09524 , PNT09525


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
2 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
3 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
4 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
5 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
6 Sobic.003G220100 - -
7 Sobic.001G333800 MYB family transcription factor, putative, expressed -
8 Sobic.001G359300 cytochrome P450, putative, expressed -
9 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
10 Sobic.001G133000 expressed protein -
11 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
12 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
13 Sobic.003G021100 expressed protein -
14 Sobic.002G056500 with no lysine (K) kinase 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
15 Sobic.003G191700 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
16 Sobic.010G002700 expressed protein -
17 Sobic.001G251800 OsFBK23 - F-box domain and kelch repeat containing protein, expressed -
18 Sobic.004G189800 ABC1 family domain containing protein, putative, expressed -
19 Sobic.010G275700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
20 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III


Gene co-expression network
sample Sobic009G038900 Sobic009G038900 Sobic004G281800 Sobic004G281800 Sobic009G038900--Sobic004G281800 Sobic005G101200 Sobic005G101200 Sobic009G038900--Sobic005G101200 Sobic005G106600 Sobic005G106600 Sobic009G038900--Sobic005G106600 Sobic005G068700 Sobic005G068700 Sobic009G038900--Sobic005G068700 Sobic004G042200 Sobic004G042200 Sobic009G038900--Sobic004G042200 Sobic003G220100 Sobic003G220100 Sobic009G038900--Sobic003G220100 Sobic001G333800 Sobic001G333800 Sobic009G038900--Sobic001G333800 Sobic001G359300 Sobic001G359300 Sobic009G038900--Sobic001G359300 Sobic010G085100 Sobic010G085100 Sobic009G038900--Sobic010G085100 Sobic004G281800--Sobic009G038900 Sobic004G281800--Sobic005G101200 Sobic001G352400 Sobic001G352400 Sobic004G281800--Sobic001G352400 Sobic010G275700 Sobic010G275700 Sobic004G281800--Sobic010G275700 Sobic003G021100 Sobic003G021100 Sobic004G281800--Sobic003G021100 Sobic002G382700 Sobic002G382700 Sobic004G281800--Sobic002G382700 Sobic004G281800--Sobic005G106600 Sobic004G312600 Sobic004G312600 Sobic004G281800--Sobic004G312600 Sobic004G281800--Sobic003G220100 Sobic004G189800 Sobic004G189800 Sobic005G101200--Sobic004G189800 Sobic005G101200--Sobic005G068700 Sobic002G404800 Sobic002G404800 Sobic005G101200--Sobic002G404800 Sobic001G258200 Sobic001G258200 Sobic005G101200--Sobic001G258200 Sobic005G101200--Sobic009G038900 Sobic007G105500 Sobic007G105500 Sobic005G101200--Sobic007G105500 Sobic003G185900 Sobic003G185900 Sobic005G101200--Sobic003G185900 Sobic005G101200--Sobic010G085100 Sobic005G101200--Sobic004G281800 Sobic005G106600--Sobic003G220100 Sobic005G106600--Sobic001G333800 Sobic005G106600--Sobic009G038900 Sobic001G133000 Sobic001G133000 Sobic005G106600--Sobic001G133000 Sobic005G106600--Sobic004G312600 Sobic007G058100 Sobic007G058100 Sobic005G106600--Sobic007G058100 Sobic007G136200 Sobic007G136200 Sobic005G106600--Sobic007G136200 Sobic006G219600 Sobic006G219600 Sobic005G106600--Sobic006G219600 Sobic001G378100 Sobic001G378100 Sobic005G106600--Sobic001G378100 Sobic005G068700--Sobic001G258200 Sobic005G068700--Sobic005G101200 Sobic005G068700--Sobic003G185900 Sobic002G056500 Sobic002G056500 Sobic005G068700--Sobic002G056500 Sobic008G129900 Sobic008G129900 Sobic005G068700--Sobic008G129900 Sobic008G033000 Sobic008G033000 Sobic005G068700--Sobic008G033000 Sobic001G217900 Sobic001G217900 Sobic005G068700--Sobic001G217900 Sobic002G390100 Sobic002G390100 Sobic005G068700--Sobic002G390100 Sobic002G206300 Sobic002G206300 Sobic005G068700--Sobic002G206300 Sobic004G042200--Sobic009G038900 Sobic010G002700 Sobic010G002700 Sobic004G042200--Sobic010G002700 Sobic003G191700 Sobic003G191700 Sobic004G042200--Sobic003G191700 Sobic006G050700 Sobic006G050700 Sobic004G042200--Sobic006G050700 Sobic004G042200--Sobic003G220100 Sobic003G155100 Sobic003G155100 Sobic004G042200--Sobic003G155100 Sobic010G243900 Sobic010G243900 Sobic004G042200--Sobic010G243900 Sobic004G042200--Sobic005G106600 Sobic006G133900 Sobic006G133900 Sobic004G042200--Sobic006G133900 Sobic003G220100--Sobic005G106600 Sobic003G220100--Sobic001G333800 Sobic003G220100--Sobic004G312600 Sobic003G220100--Sobic007G058100 Sobic003G220100--Sobic009G038900 Sobic003G220100--Sobic001G378100 Sobic001G169900 Sobic001G169900 Sobic003G220100--Sobic001G169900 Sobic003G073800 Sobic003G073800 Sobic003G220100--Sobic003G073800 Sobic003G220100--Sobic010G002700 Sobic001G333800--Sobic001G359300 Sobic001G333800--Sobic005G106600 Sobic009G093100 Sobic009G093100 Sobic001G333800--Sobic009G093100 Sobic006G090100 Sobic006G090100 Sobic001G333800--Sobic006G090100 Sobic001G303200 Sobic001G303200 Sobic001G333800--Sobic001G303200 Sobic001G333800--Sobic003G220100 Sobic001G333800--Sobic009G038900 Sobic009G073900 Sobic009G073900 Sobic001G333800--Sobic009G073900 Sobic001G077300 Sobic001G077300 Sobic001G333800--Sobic001G077300 Sobic001G359300--Sobic001G077300 Sobic001G359300--Sobic001G258200 Sobic001G359300--Sobic009G093100 Sobic001G359300--Sobic001G333800 Sobic001G359300--Sobic002G382700 Sobic001G359300--Sobic009G073900 Sobic001G359300--Sobic003G073800 Sobic001G359300--Sobic006G090100 Sobic001G359300--Sobic005G068700 Sobic010G085100--Sobic005G101200 Sobic010G085100--Sobic003G185900 Sobic010G085100--Sobic007G105500 Sobic010G085100--Sobic002G404800 Sobic004G215800 Sobic004G215800 Sobic010G085100--Sobic004G215800 Sobic008G140200 Sobic008G140200 Sobic010G085100--Sobic008G140200 Sobic003G036200 Sobic003G036200 Sobic010G085100--Sobic003G036200 Sobic010G085100--Sobic008G033000 Sobic004G154200 Sobic004G154200 Sobic010G085100--Sobic004G154200
Octagon: transcription factors


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