Gene annotation
Transcriptome id Sobic.001G333800.1,Sobic.001G333800.2
Synonym Sb01g032240
Functional annotation MYB family transcription factor, putative, expressed
UniProt A0A1Z5S8X9 , A0A1B6QMG1
Pfam -
Panther DB PTHR22970 PTHR22970:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G26580 : -
RAP-DB (Rice) LOC_Os03g31230.2 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a002905
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G359300 cytochrome P450, putative, expressed -
2 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
3 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
4 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
5 Sobic.001G303200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed -
6 Sobic.003G220100 - -
7 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
8 Sobic.009G073900 thioredoxin, putative, expressed -
9 Sobic.001G077300 thioredoxin, putative, expressed -
10 Sobic.001G207800 integral membrane protein, putative, expressed -
11 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
12 Sobic.003G166200 expressed protein -
13 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
14 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
15 Sobic.001G283100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed -
16 Sobic.010G275700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
17 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
18 Sobic.006G065100 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
19 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
20 Sobic.007G227100 expressed protein -


Gene co-expression network
sample Sobic001G333800 Sobic001G333800 Sobic001G359300 Sobic001G359300 Sobic001G333800--Sobic001G359300 Sobic005G106600 Sobic005G106600 Sobic001G333800--Sobic005G106600 Sobic009G093100 Sobic009G093100 Sobic001G333800--Sobic009G093100 Sobic006G090100 Sobic006G090100 Sobic001G333800--Sobic006G090100 Sobic001G303200 Sobic001G303200 Sobic001G333800--Sobic001G303200 Sobic003G220100 Sobic003G220100 Sobic001G333800--Sobic003G220100 Sobic009G038900 Sobic009G038900 Sobic001G333800--Sobic009G038900 Sobic009G073900 Sobic009G073900 Sobic001G333800--Sobic009G073900 Sobic001G077300 Sobic001G077300 Sobic001G333800--Sobic001G077300 Sobic001G359300--Sobic001G077300 Sobic001G258200 Sobic001G258200 Sobic001G359300--Sobic001G258200 Sobic001G359300--Sobic009G093100 Sobic001G359300--Sobic001G333800 Sobic002G382700 Sobic002G382700 Sobic001G359300--Sobic002G382700 Sobic001G359300--Sobic009G073900 Sobic003G073800 Sobic003G073800 Sobic001G359300--Sobic003G073800 Sobic001G359300--Sobic006G090100 Sobic005G068700 Sobic005G068700 Sobic001G359300--Sobic005G068700 Sobic005G106600--Sobic003G220100 Sobic005G106600--Sobic001G333800 Sobic005G106600--Sobic009G038900 Sobic001G133000 Sobic001G133000 Sobic005G106600--Sobic001G133000 Sobic004G312600 Sobic004G312600 Sobic005G106600--Sobic004G312600 Sobic007G058100 Sobic007G058100 Sobic005G106600--Sobic007G058100 Sobic007G136200 Sobic007G136200 Sobic005G106600--Sobic007G136200 Sobic006G219600 Sobic006G219600 Sobic005G106600--Sobic006G219600 Sobic001G378100 Sobic001G378100 Sobic005G106600--Sobic001G378100 Sobic009G093100--Sobic001G077300 Sobic009G093100--Sobic001G359300 Sobic004G019800 Sobic004G019800 Sobic009G093100--Sobic004G019800 Sobic006G065100 Sobic006G065100 Sobic009G093100--Sobic006G065100 Sobic001G536700 Sobic001G536700 Sobic009G093100--Sobic001G536700 Sobic009G093100--Sobic009G073900 Sobic009G093100--Sobic001G378100 Sobic002G206300 Sobic002G206300 Sobic009G093100--Sobic002G206300 Sobic009G093100--Sobic001G333800 Sobic001G207800 Sobic001G207800 Sobic006G090100--Sobic001G207800 Sobic001G283100 Sobic001G283100 Sobic006G090100--Sobic001G283100 Sobic006G090100--Sobic001G077300 Sobic001G509200 Sobic001G509200 Sobic006G090100--Sobic001G509200 Sobic006G090100--Sobic009G073900 Sobic006G090100--Sobic002G382700 Sobic003G341300 Sobic003G341300 Sobic006G090100--Sobic003G341300 Sobic001G046000 Sobic001G046000 Sobic006G090100--Sobic001G046000 Sobic002G081400 Sobic002G081400 Sobic006G090100--Sobic002G081400 Sobic001G303200--Sobic001G283100 Sobic001G303200--Sobic002G382700 Sobic001G303200--Sobic001G333800 Sobic001G303200--Sobic001G207800 Sobic006G102000 Sobic006G102000 Sobic001G303200--Sobic006G102000 Sobic007G108900 Sobic007G108900 Sobic001G303200--Sobic007G108900 Sobic006G221000 Sobic006G221000 Sobic001G303200--Sobic006G221000 Sobic001G303200--Sobic006G090100 Sobic003G094100 Sobic003G094100 Sobic001G303200--Sobic003G094100 Sobic003G220100--Sobic005G106600 Sobic003G220100--Sobic001G333800 Sobic003G220100--Sobic004G312600 Sobic003G220100--Sobic007G058100 Sobic003G220100--Sobic009G038900 Sobic003G220100--Sobic001G378100 Sobic001G169900 Sobic001G169900 Sobic003G220100--Sobic001G169900 Sobic003G220100--Sobic003G073800 Sobic010G002700 Sobic010G002700 Sobic003G220100--Sobic010G002700 Sobic004G281800 Sobic004G281800 Sobic009G038900--Sobic004G281800 Sobic005G101200 Sobic005G101200 Sobic009G038900--Sobic005G101200 Sobic009G038900--Sobic005G106600 Sobic009G038900--Sobic005G068700 Sobic004G042200 Sobic004G042200 Sobic009G038900--Sobic004G042200 Sobic009G038900--Sobic003G220100 Sobic009G038900--Sobic001G333800 Sobic009G038900--Sobic001G359300 Sobic010G085100 Sobic010G085100 Sobic009G038900--Sobic010G085100 Sobic009G073900--Sobic001G077300 Sobic003G003450 Sobic003G003450 Sobic009G073900--Sobic003G003450 Sobic009G073900--Sobic006G090100 Sobic009G073900--Sobic001G509200 Sobic007G087100 Sobic007G087100 Sobic009G073900--Sobic007G087100 Sobic009G073900--Sobic003G094100 Sobic009G073900--Sobic002G081400 Sobic007G135800 Sobic007G135800 Sobic009G073900--Sobic007G135800 Sobic006G213700 Sobic006G213700 Sobic009G073900--Sobic006G213700 Sobic001G077300--Sobic009G073900 Sobic001G077300--Sobic006G090100 Sobic006G235400 Sobic006G235400 Sobic001G077300--Sobic006G235400 Sobic004G127800 Sobic004G127800 Sobic001G077300--Sobic004G127800 Sobic001G077300--Sobic001G359300 Sobic001G077300--Sobic009G093100 Sobic001G077300--Sobic003G341300 Sobic006G212800 Sobic006G212800 Sobic001G077300--Sobic006G212800 Sobic001G077300--Sobic003G003450
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.