Gene annotation
Transcriptome id Sobic.001G077300.3,Sobic.001G077300.2,Sobic.001G077300.1
Synonym HCF164, Sb01g006990
Functional annotation thioredoxin, putative, expressed
UniProt A0A1B6QHS5 , A0A1B6QHT7 , A0A1B6QHU2
Pfam PF00085
Panther DB PTHR10438 PTHR10438:SF272
NCBI CDD KOG0907; Thioredoxin
KEGG Orthology -
Gene Ontology GO:0015035; protein disulfide oxidoreductase activity GO:0006662glycerol ether metabolic process


Orthologs (automatic annotation)
TAIR AT4G37200 : Thioredoxin superfamily protein
RAP-DB (Rice) LOC_Os03g55820.1 : thioredoxin, putative, expressed
MaizeGDB (Corn) Zm00025a008318 , Zm00025a016706
Brachypodium KQK13014
Barley HORVU5Hr1G098000.1 , HORVU5Hr1G098000.6 , HORVU5Hr1G098000.7 , HORVU5Hr1G098000.4 , HORVU5Hr1G098000.5 , HORVU5Hr1G098000.2 , HORVU5Hr1G098000.3
Wheat TraesCS5A02G403300 , TraesCS5A02G403300 , TraesCS5D02G413300 , TraesCS5B02G408100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G073900 thioredoxin, putative, expressed -
2 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
3 Sobic.006G235400 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
4 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
5 Sobic.001G359300 cytochrome P450, putative, expressed -
6 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
7 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.006G212800 expressed protein -
9 Sobic.003G003450 - K01177: beta-amylase
10 Sobic.007G087100 pentatricopeptide, putative, expressed -
11 Sobic.001G207800 integral membrane protein, putative, expressed -
12 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
13 Sobic.003G073800 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
14 Sobic.007G227100 expressed protein -
15 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
16 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
17 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
18 Sobic.001G536700 expressed protein -
19 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -
20 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase


Gene co-expression network
sample Sobic001G077300 Sobic001G077300 Sobic009G073900 Sobic009G073900 Sobic001G077300--Sobic009G073900 Sobic006G090100 Sobic006G090100 Sobic001G077300--Sobic006G090100 Sobic006G235400 Sobic006G235400 Sobic001G077300--Sobic006G235400 Sobic004G127800 Sobic004G127800 Sobic001G077300--Sobic004G127800 Sobic001G359300 Sobic001G359300 Sobic001G077300--Sobic001G359300 Sobic009G093100 Sobic009G093100 Sobic001G077300--Sobic009G093100 Sobic003G341300 Sobic003G341300 Sobic001G077300--Sobic003G341300 Sobic006G212800 Sobic006G212800 Sobic001G077300--Sobic006G212800 Sobic003G003450 Sobic003G003450 Sobic001G077300--Sobic003G003450 Sobic009G073900--Sobic001G077300 Sobic009G073900--Sobic003G003450 Sobic009G073900--Sobic006G090100 Sobic001G509200 Sobic001G509200 Sobic009G073900--Sobic001G509200 Sobic007G087100 Sobic007G087100 Sobic009G073900--Sobic007G087100 Sobic003G094100 Sobic003G094100 Sobic009G073900--Sobic003G094100 Sobic002G081400 Sobic002G081400 Sobic009G073900--Sobic002G081400 Sobic007G135800 Sobic007G135800 Sobic009G073900--Sobic007G135800 Sobic006G213700 Sobic006G213700 Sobic009G073900--Sobic006G213700 Sobic001G207800 Sobic001G207800 Sobic006G090100--Sobic001G207800 Sobic001G283100 Sobic001G283100 Sobic006G090100--Sobic001G283100 Sobic006G090100--Sobic001G077300 Sobic006G090100--Sobic001G509200 Sobic006G090100--Sobic009G073900 Sobic002G382700 Sobic002G382700 Sobic006G090100--Sobic002G382700 Sobic006G090100--Sobic003G341300 Sobic001G046000 Sobic001G046000 Sobic006G090100--Sobic001G046000 Sobic006G090100--Sobic002G081400 Sobic010G231300 Sobic010G231300 Sobic006G235400--Sobic010G231300 Sobic006G235400--Sobic001G077300 Sobic004G128900 Sobic004G128900 Sobic006G235400--Sobic004G128900 Sobic006G235400--Sobic003G341300 Sobic003G409700 Sobic003G409700 Sobic006G235400--Sobic003G409700 Sobic008G129900 Sobic008G129900 Sobic006G235400--Sobic008G129900 Sobic006G161500 Sobic006G161500 Sobic006G235400--Sobic006G161500 Sobic003G380200 Sobic003G380200 Sobic006G235400--Sobic003G380200 Sobic001G180200 Sobic001G180200 Sobic006G235400--Sobic001G180200 Sobic007G227100 Sobic007G227100 Sobic004G127800--Sobic007G227100 Sobic004G127800--Sobic001G077300 Sobic006G235300 Sobic006G235300 Sobic004G127800--Sobic006G235300 Sobic004G312600 Sobic004G312600 Sobic004G127800--Sobic004G312600 Sobic004G127800--Sobic006G235400 Sobic004G127800--Sobic006G090100 Sobic001G331600 Sobic001G331600 Sobic004G127800--Sobic001G331600 Sobic006G191500 Sobic006G191500 Sobic004G127800--Sobic006G191500 Sobic004G127800--Sobic009G073900 Sobic001G359300--Sobic001G077300 Sobic001G258200 Sobic001G258200 Sobic001G359300--Sobic001G258200 Sobic001G359300--Sobic009G093100 Sobic001G333800 Sobic001G333800 Sobic001G359300--Sobic001G333800 Sobic001G359300--Sobic002G382700 Sobic001G359300--Sobic009G073900 Sobic003G073800 Sobic003G073800 Sobic001G359300--Sobic003G073800 Sobic001G359300--Sobic006G090100 Sobic005G068700 Sobic005G068700 Sobic001G359300--Sobic005G068700 Sobic009G093100--Sobic001G077300 Sobic009G093100--Sobic001G359300 Sobic004G019800 Sobic004G019800 Sobic009G093100--Sobic004G019800 Sobic006G065100 Sobic006G065100 Sobic009G093100--Sobic006G065100 Sobic001G536700 Sobic001G536700 Sobic009G093100--Sobic001G536700 Sobic009G093100--Sobic009G073900 Sobic001G378100 Sobic001G378100 Sobic009G093100--Sobic001G378100 Sobic002G206300 Sobic002G206300 Sobic009G093100--Sobic002G206300 Sobic009G093100--Sobic001G333800 Sobic003G341300--Sobic001G180200 Sobic007G157300 Sobic007G157300 Sobic003G341300--Sobic007G157300 Sobic003G341300--Sobic001G283100 Sobic003G341300--Sobic003G409700 Sobic003G341300--Sobic006G235400 Sobic002G162400 Sobic002G162400 Sobic003G341300--Sobic002G162400 Sobic003G341300--Sobic001G077300 Sobic003G341300--Sobic006G090100 Sobic003G341300--Sobic003G094100 Sobic009G207900 Sobic009G207900 Sobic006G212800--Sobic009G207900 Sobic006G212800--Sobic001G077300 Sobic006G212800--Sobic001G180200 Sobic006G212800--Sobic007G135800 Sobic006G212800--Sobic002G206300 Sobic006G212800--Sobic009G073900 Sobic002G132400 Sobic002G132400 Sobic006G212800--Sobic002G132400 Sobic005G179300 Sobic005G179300 Sobic006G212800--Sobic005G179300 Sobic006G212800--Sobic002G162400 Sobic003G003450--Sobic009G073900 Sobic003G003450--Sobic001G077300 Sobic003G003450--Sobic001G509200 Sobic003G003450--Sobic006G213700 Sobic003G003450--Sobic002G081400 Sobic006G232600 Sobic006G232600 Sobic003G003450--Sobic006G232600 Sobic003G003450--Sobic006G090100 Sobic003G003450--Sobic007G087100 Sobic003G003450--Sobic001G207800
Octagon: transcription factors


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