Gene annotation
Transcriptome id Sobic.003G166200.10,Sobic.003G166200.8,Sobic.003G166200.5,Sobic.003G166200.7,Sobic.003G166200.6,Sobic.003G166200.9
Synonym Sb03g015670
Functional annotation expressed protein
UniProt C5XKM7 , A0A1W0VXL5 , A0A1B6Q3N4
Pfam -
Panther DB PTHR33334 PTHR33334:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G54500 : -
RAP-DB (Rice) LOC_Os01g31360.3 : expressed protein
MaizeGDB (Corn) Zm00025a036372 , Zm00025a024757
Brachypodium KQK04456 , KQK04457
Barley -
Wheat TraesCS3B02G227900 , TraesCS3A02G195700 , TraesCS3A02G195700 , TraesCS3A02G195700
Populus -


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cDNA sequences
Sobic.003G166200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G259600 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
2 Sobic.001G333800 MYB family transcription factor, putative, expressed -
3 Sobic.001G207800 integral membrane protein, putative, expressed -
4 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
5 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
6 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
7 Sobic.003G186900 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
8 Sobic.006G221000 starch synthase 3(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@soluble starch synthase 3, chloroplast precursor, putative, expressed -
9 Sobic.001G303200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed -
10 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
11 Sobic.004G189800 ABC1 family domain containing protein, putative, expressed -
12 Sobic.009G073900 thioredoxin, putative, expressed -
13 Sobic.001G536700 expressed protein -
14 Sobic.003G344800 phosphatidate cytidylyltransferase, putative, expressed K15892: farnesol kinase
15 Sobic.001G243200 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
16 Sobic.007G108900 APE1, putative, expressed -
17 Sobic.001G359300 cytochrome P450, putative, expressed -
18 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
19 Sobic.010G275700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
20 Sobic.001G283100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed -


Gene co-expression network
sample Sobic003G166200 Sobic003G166200 Sobic006G259600 Sobic006G259600 Sobic003G166200--Sobic006G259600 Sobic001G333800 Sobic001G333800 Sobic003G166200--Sobic001G333800 Sobic001G207800 Sobic001G207800 Sobic003G166200--Sobic001G207800 Sobic006G090100 Sobic006G090100 Sobic003G166200--Sobic006G090100 Sobic001G258200 Sobic001G258200 Sobic003G166200--Sobic001G258200 Sobic009G093100 Sobic009G093100 Sobic003G166200--Sobic009G093100 Sobic003G186900 Sobic003G186900 Sobic003G166200--Sobic003G186900 Sobic006G221000 Sobic006G221000 Sobic003G166200--Sobic006G221000 Sobic001G303200 Sobic001G303200 Sobic003G166200--Sobic001G303200 Sobic006G259600--Sobic006G090100 Sobic006G259600--Sobic001G207800 Sobic006G259600--Sobic003G166200 Sobic002G081400 Sobic002G081400 Sobic006G259600--Sobic002G081400 Sobic006G212800 Sobic006G212800 Sobic006G259600--Sobic006G212800 Sobic009G073900 Sobic009G073900 Sobic006G259600--Sobic009G073900 Sobic001G509200 Sobic001G509200 Sobic006G259600--Sobic001G509200 Sobic001G243200 Sobic001G243200 Sobic006G259600--Sobic001G243200 Sobic001G077300 Sobic001G077300 Sobic006G259600--Sobic001G077300 Sobic001G359300 Sobic001G359300 Sobic001G333800--Sobic001G359300 Sobic005G106600 Sobic005G106600 Sobic001G333800--Sobic005G106600 Sobic001G333800--Sobic009G093100 Sobic001G333800--Sobic006G090100 Sobic001G333800--Sobic001G303200 Sobic003G220100 Sobic003G220100 Sobic001G333800--Sobic003G220100 Sobic009G038900 Sobic009G038900 Sobic001G333800--Sobic009G038900 Sobic001G333800--Sobic009G073900 Sobic001G333800--Sobic001G077300 Sobic001G207800--Sobic006G090100 Sobic001G283100 Sobic001G283100 Sobic001G207800--Sobic001G283100 Sobic002G382700 Sobic002G382700 Sobic001G207800--Sobic002G382700 Sobic001G207800--Sobic001G509200 Sobic001G207800--Sobic001G077300 Sobic007G108900 Sobic007G108900 Sobic001G207800--Sobic007G108900 Sobic001G207800--Sobic009G073900 Sobic003G341300 Sobic003G341300 Sobic001G207800--Sobic003G341300 Sobic007G157300 Sobic007G157300 Sobic001G207800--Sobic007G157300 Sobic006G090100--Sobic001G207800 Sobic006G090100--Sobic001G283100 Sobic006G090100--Sobic001G077300 Sobic006G090100--Sobic001G509200 Sobic006G090100--Sobic009G073900 Sobic006G090100--Sobic002G382700 Sobic006G090100--Sobic003G341300 Sobic001G046000 Sobic001G046000 Sobic006G090100--Sobic001G046000 Sobic006G090100--Sobic002G081400 Sobic003G185900 Sobic003G185900 Sobic001G258200--Sobic003G185900 Sobic001G258200--Sobic002G382700 Sobic008G129900 Sobic008G129900 Sobic001G258200--Sobic008G129900 Sobic001G504400 Sobic001G504400 Sobic001G258200--Sobic001G504400 Sobic004G189800 Sobic004G189800 Sobic001G258200--Sobic004G189800 Sobic008G033000 Sobic008G033000 Sobic001G258200--Sobic008G033000 Sobic002G206300 Sobic002G206300 Sobic001G258200--Sobic002G206300 Sobic001G258200--Sobic001G359300 Sobic005G068700 Sobic005G068700 Sobic001G258200--Sobic005G068700 Sobic009G093100--Sobic001G077300 Sobic009G093100--Sobic001G359300 Sobic004G019800 Sobic004G019800 Sobic009G093100--Sobic004G019800 Sobic006G065100 Sobic006G065100 Sobic009G093100--Sobic006G065100 Sobic001G536700 Sobic001G536700 Sobic009G093100--Sobic001G536700 Sobic009G093100--Sobic009G073900 Sobic001G378100 Sobic001G378100 Sobic009G093100--Sobic001G378100 Sobic009G093100--Sobic002G206300 Sobic009G093100--Sobic001G333800 Sobic003G186900--Sobic003G166200 Sobic003G264800 Sobic003G264800 Sobic003G186900--Sobic003G264800 Sobic003G186900--Sobic005G106600 Sobic006G219600 Sobic006G219600 Sobic003G186900--Sobic006G219600 Sobic002G072400 Sobic002G072400 Sobic003G186900--Sobic002G072400 Sobic004G337400 Sobic004G337400 Sobic003G186900--Sobic004G337400 Sobic010G171600 Sobic010G171600 Sobic003G186900--Sobic010G171600 Sobic003G186900--Sobic001G333800 Sobic003G186900--Sobic001G207800 Sobic006G221000--Sobic007G108900 Sobic006G221000--Sobic001G283100 Sobic006G221000--Sobic001G207800 Sobic006G221000--Sobic006G090100 Sobic001G015200 Sobic001G015200 Sobic006G221000--Sobic001G015200 Sobic002G047400 Sobic002G047400 Sobic006G221000--Sobic002G047400 Sobic006G221000--Sobic001G303200 Sobic004G035900 Sobic004G035900 Sobic006G221000--Sobic004G035900 Sobic003G003450 Sobic003G003450 Sobic006G221000--Sobic003G003450 Sobic001G303200--Sobic001G283100 Sobic001G303200--Sobic002G382700 Sobic001G303200--Sobic001G333800 Sobic001G303200--Sobic001G207800 Sobic006G102000 Sobic006G102000 Sobic001G303200--Sobic006G102000 Sobic001G303200--Sobic007G108900 Sobic001G303200--Sobic006G221000 Sobic001G303200--Sobic006G090100 Sobic003G094100 Sobic003G094100 Sobic001G303200--Sobic003G094100
Octagon: transcription factors


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