Gene annotation
Transcriptome id Sobic.003G186900.3,Sobic.003G186900.4,Sobic.003G186900.2,Sobic.003G186900.1
Synonym Sb03g025200
Functional annotation -
UniProt A0A1B6Q469
Pfam PF04851 PF00271
Panther DB PTHR24031 PTHR24031:SF246
NCBI CDD -
KEGG Orthology K12812; DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G11170 : DEAD/DEAH box RNA helicase family protein
RAP-DB (Rice) LOC_Os01g36920.2 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a036815 , Zm00025a038332
Brachypodium KQK08271 , KQK08265 , KQK08266 , KQK08269
Barley HORVU1Hr1G095100.2 , HORVU1Hr1G095100.1 , HORVU1Hr1G095100.3 , HORVU1Hr1G095100.4 , HORVU1Hr1G095100.5 , HORVU1Hr1G095100.6 , HORVU1Hr1G095100.7
Wheat TraesCS3A02G200100 , TraesCS3A02G200100 , TraesCS1A02G443400 , TraesCS1D02G451300 , TraesCS3B02G224400 , TraesCS3D02G204400 , TraesCS1B02G477500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G166200 expressed protein -
2 Sobic.003G264800 expressed protein -
3 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
4 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
5 Sobic.002G072400 zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed K00514: ZDS, zeta-carotene desaturase
6 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
7 Sobic.010G171600 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04733: interleukin-1 receptor-associated kinase 4
8 Sobic.001G333800 MYB family transcription factor, putative, expressed -
9 Sobic.001G207800 integral membrane protein, putative, expressed -
10 Sobic.001G436400 immature colon carcinoma transcript 1 protein precursor, putative, expressed K15033: peptidyl-tRNA hydrolase ICT1
11 Sobic.003G003450 - K01177: beta-amylase
12 Sobic.001G536700 expressed protein -
13 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
14 Sobic.008G187100 early-responsive to dehydration protein-related, putative, expressed -
15 Sobic.009G073900 thioredoxin, putative, expressed -
16 Sobic.001G133000 expressed protein -
17 Sobic.006G259600 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
18 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
19 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
20 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein


Gene co-expression network
sample Sobic003G186900 Sobic003G186900 Sobic003G166200 Sobic003G166200 Sobic003G186900--Sobic003G166200 Sobic003G264800 Sobic003G264800 Sobic003G186900--Sobic003G264800 Sobic005G106600 Sobic005G106600 Sobic003G186900--Sobic005G106600 Sobic006G219600 Sobic006G219600 Sobic003G186900--Sobic006G219600 Sobic002G072400 Sobic002G072400 Sobic003G186900--Sobic002G072400 Sobic004G337400 Sobic004G337400 Sobic003G186900--Sobic004G337400 Sobic010G171600 Sobic010G171600 Sobic003G186900--Sobic010G171600 Sobic001G333800 Sobic001G333800 Sobic003G186900--Sobic001G333800 Sobic001G207800 Sobic001G207800 Sobic003G186900--Sobic001G207800 Sobic006G259600 Sobic006G259600 Sobic003G166200--Sobic006G259600 Sobic003G166200--Sobic001G333800 Sobic003G166200--Sobic001G207800 Sobic006G090100 Sobic006G090100 Sobic003G166200--Sobic006G090100 Sobic001G258200 Sobic001G258200 Sobic003G166200--Sobic001G258200 Sobic009G093100 Sobic009G093100 Sobic003G166200--Sobic009G093100 Sobic003G166200--Sobic003G186900 Sobic006G221000 Sobic006G221000 Sobic003G166200--Sobic006G221000 Sobic001G303200 Sobic001G303200 Sobic003G166200--Sobic001G303200 Sobic003G264800--Sobic003G186900 Sobic003G003450 Sobic003G003450 Sobic003G264800--Sobic003G003450 Sobic006G232600 Sobic006G232600 Sobic003G264800--Sobic006G232600 Sobic003G264800--Sobic005G106600 Sobic003G264800--Sobic002G072400 Sobic009G103000 Sobic009G103000 Sobic003G264800--Sobic009G103000 Sobic004G238200 Sobic004G238200 Sobic003G264800--Sobic004G238200 Sobic004G207400 Sobic004G207400 Sobic003G264800--Sobic004G207400 Sobic003G264800--Sobic004G337400 Sobic003G220100 Sobic003G220100 Sobic005G106600--Sobic003G220100 Sobic005G106600--Sobic001G333800 Sobic009G038900 Sobic009G038900 Sobic005G106600--Sobic009G038900 Sobic001G133000 Sobic001G133000 Sobic005G106600--Sobic001G133000 Sobic004G312600 Sobic004G312600 Sobic005G106600--Sobic004G312600 Sobic007G058100 Sobic007G058100 Sobic005G106600--Sobic007G058100 Sobic007G136200 Sobic007G136200 Sobic005G106600--Sobic007G136200 Sobic005G106600--Sobic006G219600 Sobic001G378100 Sobic001G378100 Sobic005G106600--Sobic001G378100 Sobic003G155100 Sobic003G155100 Sobic006G219600--Sobic003G155100 Sobic009G201300 Sobic009G201300 Sobic006G219600--Sobic009G201300 Sobic002G124600 Sobic002G124600 Sobic006G219600--Sobic002G124600 Sobic006G050700 Sobic006G050700 Sobic006G219600--Sobic006G050700 Sobic001G298900 Sobic001G298900 Sobic006G219600--Sobic001G298900 Sobic006G133900 Sobic006G133900 Sobic006G219600--Sobic006G133900 Sobic006G219600--Sobic001G133000 Sobic006G219600--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic006G219600--Sobic005G084500 Sobic002G072400--Sobic004G207400 Sobic002G349100 Sobic002G349100 Sobic002G072400--Sobic002G349100 Sobic004G317700 Sobic004G317700 Sobic002G072400--Sobic004G317700 Sobic002G072400--Sobic004G238200 Sobic002G129400 Sobic002G129400 Sobic002G072400--Sobic002G129400 Sobic004G307100 Sobic004G307100 Sobic002G072400--Sobic004G307100 Sobic004G281900 Sobic004G281900 Sobic002G072400--Sobic004G281900 Sobic007G166200 Sobic007G166200 Sobic002G072400--Sobic007G166200 Sobic002G081400 Sobic002G081400 Sobic002G072400--Sobic002G081400 Sobic004G337400--Sobic007G136200 Sobic004G337400--Sobic001G378100 Sobic004G337400--Sobic006G232600 Sobic004G019800 Sobic004G019800 Sobic004G337400--Sobic004G019800 Sobic003G077700 Sobic003G077700 Sobic004G337400--Sobic003G077700 Sobic010G002700 Sobic010G002700 Sobic004G337400--Sobic010G002700 Sobic004G337400--Sobic005G106600 Sobic004G337400--Sobic005G084500 Sobic010G043800 Sobic010G043800 Sobic004G337400--Sobic010G043800 Sobic001G500600 Sobic001G500600 Sobic010G171600--Sobic001G500600 Sobic006G233700 Sobic006G233700 Sobic010G171600--Sobic006G233700 Sobic003G233700 Sobic003G233700 Sobic010G171600--Sobic003G233700 Sobic007G103400 Sobic007G103400 Sobic010G171600--Sobic007G103400 Sobic001G516901 Sobic001G516901 Sobic010G171600--Sobic001G516901 Sobic006G197300 Sobic006G197300 Sobic010G171600--Sobic006G197300 Sobic008G074000 Sobic008G074000 Sobic010G171600--Sobic008G074000 Sobic003G287900 Sobic003G287900 Sobic010G171600--Sobic003G287900 Sobic004G336200 Sobic004G336200 Sobic010G171600--Sobic004G336200 Sobic001G359300 Sobic001G359300 Sobic001G333800--Sobic001G359300 Sobic001G333800--Sobic005G106600 Sobic001G333800--Sobic009G093100 Sobic001G333800--Sobic006G090100 Sobic001G333800--Sobic001G303200 Sobic001G333800--Sobic003G220100 Sobic001G333800--Sobic009G038900 Sobic009G073900 Sobic009G073900 Sobic001G333800--Sobic009G073900 Sobic001G077300 Sobic001G077300 Sobic001G333800--Sobic001G077300 Sobic001G207800--Sobic006G090100 Sobic001G283100 Sobic001G283100 Sobic001G207800--Sobic001G283100 Sobic002G382700 Sobic002G382700 Sobic001G207800--Sobic002G382700 Sobic001G509200 Sobic001G509200 Sobic001G207800--Sobic001G509200 Sobic001G207800--Sobic001G077300 Sobic007G108900 Sobic007G108900 Sobic001G207800--Sobic007G108900 Sobic001G207800--Sobic009G073900 Sobic003G341300 Sobic003G341300 Sobic001G207800--Sobic003G341300 Sobic007G157300 Sobic007G157300 Sobic001G207800--Sobic007G157300
Octagon: transcription factors


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