Gene annotation
Transcriptome id Sobic.003G264800.2,Sobic.003G264800.1
Synonym Sb03g031820
Functional annotation expressed protein
UniProt C5XHF9 , A0A1W0VZ13
Pfam PF12146
Panther DB PTHR11005 PTHR11005:SF42
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G15060 : Uncharacterised conserved protein UCP031088, alpha/beta hydrolase
RAP-DB (Rice) LOC_Os01g49760.1 : expressed protein
MaizeGDB (Corn) Zm00025a027938
Brachypodium PNT72624 , KQK09282
Barley HORVU3Hr1G064390.11 , HORVU3Hr1G064390.10 , HORVU3Hr1G064390.9 , HORVU3Hr1G064390.8 , HORVU3Hr1G064390.3 , HORVU3Hr1G064390.2 , HORVU3Hr1G064390.1 , HORVU3Hr1G064390.7 , HORVU3Hr1G064390.6 , HORVU3Hr1G064390.5 , HORVU3Hr1G064390.4 , HORVU3Hr1G064390.13 , HORVU3Hr1G064390.12 , HORVU3Hr1G064390.15 , HORVU3Hr1G064390.14
Wheat TraesCS3B02G293700 , TraesCS3B02G293700 , TraesCS3B02G293700 , TraesCS3B02G293700 , TraesCS3D02G260800 , TraesCS3D02G260800 , TraesCS3D02G260800 , TraesCS3D02G260800 , TraesCS3A02G260600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G186900 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
2 Sobic.003G003450 - K01177: beta-amylase
3 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
4 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
5 Sobic.002G072400 zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed K00514: ZDS, zeta-carotene desaturase
6 Sobic.009G103000 ubiquitin family protein, putative, expressed -
7 Sobic.004G238200 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
8 Sobic.004G207400 hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed K03526: gcpE, (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
9 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
10 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
11 Sobic.001G077300 thioredoxin, putative, expressed -
12 Sobic.010G171600 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04733: interleukin-1 receptor-associated kinase 4
13 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
14 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
15 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
16 Sobic.009G073900 thioredoxin, putative, expressed -
17 Sobic.003G073800 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
18 Sobic.001G133000 expressed protein -
19 Sobic.002G321901 - -
20 Sobic.001G207800 integral membrane protein, putative, expressed -


Gene co-expression network
sample Sobic003G264800 Sobic003G264800 Sobic003G186900 Sobic003G186900 Sobic003G264800--Sobic003G186900 Sobic003G003450 Sobic003G003450 Sobic003G264800--Sobic003G003450 Sobic006G232600 Sobic006G232600 Sobic003G264800--Sobic006G232600 Sobic005G106600 Sobic005G106600 Sobic003G264800--Sobic005G106600 Sobic002G072400 Sobic002G072400 Sobic003G264800--Sobic002G072400 Sobic009G103000 Sobic009G103000 Sobic003G264800--Sobic009G103000 Sobic004G238200 Sobic004G238200 Sobic003G264800--Sobic004G238200 Sobic004G207400 Sobic004G207400 Sobic003G264800--Sobic004G207400 Sobic004G337400 Sobic004G337400 Sobic003G264800--Sobic004G337400 Sobic003G166200 Sobic003G166200 Sobic003G186900--Sobic003G166200 Sobic003G186900--Sobic003G264800 Sobic003G186900--Sobic005G106600 Sobic006G219600 Sobic006G219600 Sobic003G186900--Sobic006G219600 Sobic003G186900--Sobic002G072400 Sobic003G186900--Sobic004G337400 Sobic010G171600 Sobic010G171600 Sobic003G186900--Sobic010G171600 Sobic001G333800 Sobic001G333800 Sobic003G186900--Sobic001G333800 Sobic001G207800 Sobic001G207800 Sobic003G186900--Sobic001G207800 Sobic009G073900 Sobic009G073900 Sobic003G003450--Sobic009G073900 Sobic001G077300 Sobic001G077300 Sobic003G003450--Sobic001G077300 Sobic001G509200 Sobic001G509200 Sobic003G003450--Sobic001G509200 Sobic006G213700 Sobic006G213700 Sobic003G003450--Sobic006G213700 Sobic002G081400 Sobic002G081400 Sobic003G003450--Sobic002G081400 Sobic003G003450--Sobic006G232600 Sobic006G090100 Sobic006G090100 Sobic003G003450--Sobic006G090100 Sobic007G087100 Sobic007G087100 Sobic003G003450--Sobic007G087100 Sobic003G003450--Sobic001G207800 Sobic009G170200 Sobic009G170200 Sobic006G232600--Sobic009G170200 Sobic006G232600--Sobic007G087100 Sobic006G232600--Sobic003G003450 Sobic001G378100 Sobic001G378100 Sobic006G232600--Sobic001G378100 Sobic006G232600--Sobic009G073900 Sobic006G233700 Sobic006G233700 Sobic006G232600--Sobic006G233700 Sobic006G232600--Sobic009G103000 Sobic006G232600--Sobic001G077300 Sobic006G232600--Sobic002G081400 Sobic003G220100 Sobic003G220100 Sobic005G106600--Sobic003G220100 Sobic005G106600--Sobic001G333800 Sobic009G038900 Sobic009G038900 Sobic005G106600--Sobic009G038900 Sobic001G133000 Sobic001G133000 Sobic005G106600--Sobic001G133000 Sobic004G312600 Sobic004G312600 Sobic005G106600--Sobic004G312600 Sobic007G058100 Sobic007G058100 Sobic005G106600--Sobic007G058100 Sobic007G136200 Sobic007G136200 Sobic005G106600--Sobic007G136200 Sobic005G106600--Sobic006G219600 Sobic005G106600--Sobic001G378100 Sobic002G072400--Sobic004G207400 Sobic002G349100 Sobic002G349100 Sobic002G072400--Sobic002G349100 Sobic004G317700 Sobic004G317700 Sobic002G072400--Sobic004G317700 Sobic002G072400--Sobic004G238200 Sobic002G129400 Sobic002G129400 Sobic002G072400--Sobic002G129400 Sobic004G307100 Sobic004G307100 Sobic002G072400--Sobic004G307100 Sobic004G281900 Sobic004G281900 Sobic002G072400--Sobic004G281900 Sobic007G166200 Sobic007G166200 Sobic002G072400--Sobic007G166200 Sobic002G072400--Sobic002G081400 Sobic009G103000--Sobic007G087100 Sobic009G103000--Sobic001G077300 Sobic009G103000--Sobic009G170200 Sobic009G103000--Sobic009G073900 Sobic009G103000--Sobic003G003450 Sobic009G103000--Sobic006G232600 Sobic009G103000--Sobic006G213700 Sobic009G103000--Sobic001G378100 Sobic006G212800 Sobic006G212800 Sobic009G103000--Sobic006G212800 Sobic003G232700 Sobic003G232700 Sobic004G238200--Sobic003G232700 Sobic004G238200--Sobic004G207400 Sobic001G500600 Sobic001G500600 Sobic004G238200--Sobic001G500600 Sobic005G084500 Sobic005G084500 Sobic004G238200--Sobic005G084500 Sobic001G516901 Sobic001G516901 Sobic004G238200--Sobic001G516901 Sobic004G238200--Sobic002G072400 Sobic007G005400 Sobic007G005400 Sobic004G238200--Sobic007G005400 Sobic006G197300 Sobic006G197300 Sobic004G238200--Sobic006G197300 Sobic004G238200--Sobic006G232600 Sobic004G207400--Sobic002G072400 Sobic004G207400--Sobic006G232600 Sobic004G207400--Sobic004G238200 Sobic004G207400--Sobic009G170200 Sobic003G203300 Sobic003G203300 Sobic004G207400--Sobic003G203300 Sobic002G225100 Sobic002G225100 Sobic004G207400--Sobic002G225100 Sobic004G300100 Sobic004G300100 Sobic004G207400--Sobic004G300100 Sobic004G207400--Sobic004G281900 Sobic004G207400--Sobic007G166200 Sobic004G337400--Sobic007G136200 Sobic004G337400--Sobic001G378100 Sobic004G337400--Sobic006G232600 Sobic004G019800 Sobic004G019800 Sobic004G337400--Sobic004G019800 Sobic003G077700 Sobic003G077700 Sobic004G337400--Sobic003G077700 Sobic010G002700 Sobic010G002700 Sobic004G337400--Sobic010G002700 Sobic004G337400--Sobic005G106600 Sobic004G337400--Sobic005G084500 Sobic010G043800 Sobic010G043800 Sobic004G337400--Sobic010G043800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.