Gene annotation
Transcriptome id Sobic.006G219600.3,Sobic.006G219600.1,Sobic.006G219600.2
Synonym Sb06g028900
Functional annotation SIT4 phosphatase-associated protein domain containing protein, expressed
UniProt A0A1B6PN78 , A0A1B6PN94
Pfam PF04499
Panther DB PTHR12634 PTHR12634:SF16
NCBI CDD KOG2073; SAP family cell cycle dependent phosphatase-associated protein
KEGG Orthology K15501; PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G30470 : SIT4 phosphatase-associated family protein
RAP-DB (Rice) LOC_Os04g52940.1 : SIT4 phosphatase-associated protein domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022853 , Zm00025a009727 , Zm00025a003698 , Zm00025a041822 , Zm00025a057052 , Zm00025a034604
Brachypodium KQJ84657 , KQJ84659 , KQJ84658 , KQJ84671
Barley HORVU2Hr1G103580.12 , HORVU2Hr1G103580.11 , HORVU2Hr1G103580.10 , HORVU2Hr1G103580.6 , HORVU2Hr1G103580.5 , HORVU2Hr1G103580.4 , HORVU2Hr1G103580.3 , HORVU2Hr1G103580.2 , HORVU2Hr1G103580.1 , HORVU2Hr1G103580.9 , HORVU2Hr1G103580.8
Wheat TraesCS2A02G464100 , TraesCS2B02G485800 , TraesCS2B02G485800 , TraesCS2D02G465000 , TraesCS2D02G465000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
2 Sobic.009G201300 - -
3 Sobic.002G124600 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
4 Sobic.006G050700 disease resistance RPP13-like protein 1, putative, expressed -
5 Sobic.001G298900 agenet domain containing protein, putative, expressed -
6 Sobic.006G133900 NIN, putative, expressed -
7 Sobic.001G133000 expressed protein -
8 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
9 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
10 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
11 Sobic.001G333800 MYB family transcription factor, putative, expressed -
12 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
13 Sobic.006G065100 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
14 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
15 Sobic.004G356700 oligopeptidase, putative, expressed K01414: oligopeptidase A
16 Sobic.002G346200 expressed protein -
17 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
18 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
19 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
20 Sobic.005G149200 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase


Gene co-expression network
sample Sobic006G219600 Sobic006G219600 Sobic003G155100 Sobic003G155100 Sobic006G219600--Sobic003G155100 Sobic009G201300 Sobic009G201300 Sobic006G219600--Sobic009G201300 Sobic002G124600 Sobic002G124600 Sobic006G219600--Sobic002G124600 Sobic006G050700 Sobic006G050700 Sobic006G219600--Sobic006G050700 Sobic001G298900 Sobic001G298900 Sobic006G219600--Sobic001G298900 Sobic006G133900 Sobic006G133900 Sobic006G219600--Sobic006G133900 Sobic001G133000 Sobic001G133000 Sobic006G219600--Sobic001G133000 Sobic005G106600 Sobic005G106600 Sobic006G219600--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic006G219600--Sobic005G084500 Sobic008G001200 Sobic008G001200 Sobic003G155100--Sobic008G001200 Sobic003G155100--Sobic006G219600 Sobic010G206900 Sobic010G206900 Sobic003G155100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic001G194200 Sobic001G194200 Sobic003G155100--Sobic001G194200 Sobic010G010700 Sobic010G010700 Sobic003G155100--Sobic010G010700 Sobic009G256400 Sobic009G256400 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic009G201300--Sobic006G219600 Sobic009G201300--Sobic003G155100 Sobic009G201300--Sobic006G050700 Sobic003G119600 Sobic003G119600 Sobic009G201300--Sobic003G119600 Sobic004G244900 Sobic004G244900 Sobic009G201300--Sobic004G244900 Sobic009G201300--Sobic001G133000 Sobic009G201300--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic009G201300--Sobic001G457800 Sobic002G211800 Sobic002G211800 Sobic009G201300--Sobic002G211800 Sobic002G124600--Sobic006G219600 Sobic002G124600--Sobic003G155100 Sobic002G124600--Sobic001G375100 Sobic002G124600--Sobic006G133900 Sobic002G124600--Sobic008G001200 Sobic002G124600--Sobic001G298900 Sobic008G130100 Sobic008G130100 Sobic002G124600--Sobic008G130100 Sobic004G174200 Sobic004G174200 Sobic002G124600--Sobic004G174200 Sobic004G356700 Sobic004G356700 Sobic002G124600--Sobic004G356700 Sobic006G050700--Sobic003G155100 Sobic006G050700--Sobic006G219600 Sobic006G050700--Sobic008G001200 Sobic006G050700--Sobic009G201300 Sobic002G346200 Sobic002G346200 Sobic006G050700--Sobic002G346200 Sobic004G042200 Sobic004G042200 Sobic006G050700--Sobic004G042200 Sobic006G050700--Sobic010G206900 Sobic006G050700--Sobic001G230000 Sobic001G527800 Sobic001G527800 Sobic006G050700--Sobic001G527800 Sobic001G298900--Sobic001G230000 Sobic001G298900--Sobic006G219600 Sobic002G198200 Sobic002G198200 Sobic001G298900--Sobic002G198200 Sobic004G178500 Sobic004G178500 Sobic001G298900--Sobic004G178500 Sobic001G298900--Sobic003G155100 Sobic008G044100 Sobic008G044100 Sobic001G298900--Sobic008G044100 Sobic003G388100 Sobic003G388100 Sobic001G298900--Sobic003G388100 Sobic005G142800 Sobic005G142800 Sobic001G298900--Sobic005G142800 Sobic004G146600 Sobic004G146600 Sobic001G298900--Sobic004G146600 Sobic004G181600 Sobic004G181600 Sobic006G133900--Sobic004G181600 Sobic001G454500 Sobic001G454500 Sobic006G133900--Sobic001G454500 Sobic006G133900--Sobic003G155100 Sobic006G133900--Sobic006G219600 Sobic003G370700 Sobic003G370700 Sobic006G133900--Sobic003G370700 Sobic002G104100 Sobic002G104100 Sobic006G133900--Sobic002G104100 Sobic006G133900--Sobic008G130100 Sobic006G065600 Sobic006G065600 Sobic006G133900--Sobic006G065600 Sobic003G191700 Sobic003G191700 Sobic006G133900--Sobic003G191700 Sobic001G133000--Sobic005G106600 Sobic001G133000--Sobic006G219600 Sobic009G038900 Sobic009G038900 Sobic001G133000--Sobic009G038900 Sobic003G220100 Sobic003G220100 Sobic001G133000--Sobic003G220100 Sobic001G133000--Sobic006G133900 Sobic001G333800 Sobic001G333800 Sobic001G133000--Sobic001G333800 Sobic001G243200 Sobic001G243200 Sobic001G133000--Sobic001G243200 Sobic001G133000--Sobic009G201300 Sobic009G215500 Sobic009G215500 Sobic001G133000--Sobic009G215500 Sobic005G106600--Sobic003G220100 Sobic005G106600--Sobic001G333800 Sobic005G106600--Sobic009G038900 Sobic005G106600--Sobic001G133000 Sobic004G312600 Sobic004G312600 Sobic005G106600--Sobic004G312600 Sobic007G058100 Sobic007G058100 Sobic005G106600--Sobic007G058100 Sobic007G136200 Sobic007G136200 Sobic005G106600--Sobic007G136200 Sobic005G106600--Sobic006G219600 Sobic001G378100 Sobic001G378100 Sobic005G106600--Sobic001G378100 Sobic007G005400 Sobic007G005400 Sobic005G084500--Sobic007G005400 Sobic002G118200 Sobic002G118200 Sobic005G084500--Sobic002G118200 Sobic004G238200 Sobic004G238200 Sobic005G084500--Sobic004G238200 Sobic004G337400 Sobic004G337400 Sobic005G084500--Sobic004G337400 Sobic005G084500--Sobic006G219600 Sobic004G019800 Sobic004G019800 Sobic005G084500--Sobic004G019800 Sobic004G163800 Sobic004G163800 Sobic005G084500--Sobic004G163800 Sobic001G530900 Sobic001G530900 Sobic005G084500--Sobic001G530900 Sobic001G516901 Sobic001G516901 Sobic005G084500--Sobic001G516901
Octagon: transcription factors


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