Gene annotation
Transcriptome id Sobic.004G356700.1
Synonym Sb04g038310
Functional annotation oligopeptidase, putative, expressed
UniProt A0A194YU99
Pfam PF01432
Panther DB PTHR11804 PTHR11804:SF49
NCBI CDD -
KEGG Orthology K01414; oligopeptidase A
Gene Ontology GO:0006508; proteolysis GO:0004222metalloendopeptidase activity


Orthologs (automatic annotation)
TAIR AT5G10540 : Zincin-like metalloproteases family protein
RAP-DB (Rice) LOC_Os02g58340.1 : oligopeptidase, putative, expressed
MaizeGDB (Corn) Zm00025a022672
Brachypodium PNT69733
Barley HORVU6Hr1G094460.6 , HORVU6Hr1G094460.5 , HORVU6Hr1G094460.4 , HORVU6Hr1G094460.3 , HORVU6Hr1G094460.2 , HORVU6Hr1G094460.1
Wheat TraesCS6A02G416300 , TraesCS6B02G473000 , TraesCS6D02G401500
Populus PNT02377 , PNT02375 , PNT02305 , PNT02304


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cDNA sequences
Sobic.004G356700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
2 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
3 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
4 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
5 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
6 Sobic.004G244900 expressed protein -
7 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
8 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
9 Sobic.004G334300 ATMAK10, putative, expressed -
10 Sobic.003G247500 expressed protein -
11 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
12 Sobic.003G166750 - K15188: cyclin T
13 Sobic.003G119600 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
15 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
16 Sobic.001G373900 MYB family transcription factor, putative, expressed -
17 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
18 Sobic.008G054000 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
19 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
20 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26


Gene co-expression network
sample Sobic004G356700 Sobic004G356700 Sobic008G001200 Sobic008G001200 Sobic004G356700--Sobic008G001200 Sobic001G194200 Sobic001G194200 Sobic004G356700--Sobic001G194200 Sobic002G146300 Sobic002G146300 Sobic004G356700--Sobic002G146300 Sobic004G001500 Sobic004G001500 Sobic004G356700--Sobic004G001500 Sobic009G256400 Sobic009G256400 Sobic004G356700--Sobic009G256400 Sobic004G244900 Sobic004G244900 Sobic004G356700--Sobic004G244900 Sobic003G155100 Sobic003G155100 Sobic004G356700--Sobic003G155100 Sobic006G219600 Sobic006G219600 Sobic004G356700--Sobic006G219600 Sobic004G334300 Sobic004G334300 Sobic004G356700--Sobic004G334300 Sobic008G001200--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G001200--Sobic010G206900 Sobic008G001200--Sobic009G256400 Sobic003G205200 Sobic003G205200 Sobic008G001200--Sobic003G205200 Sobic010G010700 Sobic010G010700 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic005G001000 Sobic005G001000 Sobic008G001200--Sobic005G001000 Sobic004G276400 Sobic004G276400 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic004G291900 Sobic004G291900 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic002G146300--Sobic003G205200 Sobic001G370900 Sobic001G370900 Sobic002G146300--Sobic001G370900 Sobic010G139600 Sobic010G139600 Sobic002G146300--Sobic010G139600 Sobic002G146300--Sobic005G001000 Sobic002G146300--Sobic004G001500 Sobic002G146300--Sobic008G001200 Sobic002G146300--Sobic001G194200 Sobic007G075400 Sobic007G075400 Sobic002G146300--Sobic007G075400 Sobic002G146300--Sobic009G256400 Sobic004G001500--Sobic002G146300 Sobic003G043200 Sobic003G043200 Sobic004G001500--Sobic003G043200 Sobic005G187300 Sobic005G187300 Sobic004G001500--Sobic005G187300 Sobic004G001500--Sobic001G370900 Sobic001G457800 Sobic001G457800 Sobic004G001500--Sobic001G457800 Sobic004G001500--Sobic009G256400 Sobic003G166750 Sobic003G166750 Sobic004G001500--Sobic003G166750 Sobic004G001500--Sobic004G356700 Sobic001G527800 Sobic001G527800 Sobic004G001500--Sobic001G527800 Sobic009G256400--Sobic001G457800 Sobic009G256400--Sobic008G001200 Sobic009G256400--Sobic001G370900 Sobic009G256400--Sobic004G291900 Sobic009G256400--Sobic005G001000 Sobic009G256400--Sobic003G166750 Sobic009G256400--Sobic001G194200 Sobic009G256400--Sobic004G276400 Sobic009G256400--Sobic010G010700 Sobic004G244900--Sobic001G457800 Sobic004G244900--Sobic004G334300 Sobic003G119600 Sobic003G119600 Sobic004G244900--Sobic003G119600 Sobic004G244900--Sobic003G155100 Sobic004G244900--Sobic008G001200 Sobic004G244900--Sobic004G356700 Sobic009G201300 Sobic009G201300 Sobic004G244900--Sobic009G201300 Sobic002G275700 Sobic002G275700 Sobic004G244900--Sobic002G275700 Sobic003G168100 Sobic003G168100 Sobic004G244900--Sobic003G168100 Sobic003G155100--Sobic008G001200 Sobic003G155100--Sobic006G219600 Sobic003G155100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic003G155100--Sobic001G194200 Sobic003G155100--Sobic010G010700 Sobic003G155100--Sobic009G256400 Sobic003G155100--Sobic004G291900 Sobic006G219600--Sobic003G155100 Sobic006G219600--Sobic009G201300 Sobic002G124600 Sobic002G124600 Sobic006G219600--Sobic002G124600 Sobic006G050700 Sobic006G050700 Sobic006G219600--Sobic006G050700 Sobic001G298900 Sobic001G298900 Sobic006G219600--Sobic001G298900 Sobic006G133900 Sobic006G133900 Sobic006G219600--Sobic006G133900 Sobic001G133000 Sobic001G133000 Sobic006G219600--Sobic001G133000 Sobic005G106600 Sobic005G106600 Sobic006G219600--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic006G219600--Sobic005G084500 Sobic003G186000 Sobic003G186000 Sobic004G334300--Sobic003G186000 Sobic004G334300--Sobic008G001200 Sobic004G334300--Sobic001G457800 Sobic006G040500 Sobic006G040500 Sobic004G334300--Sobic006G040500 Sobic010G123600 Sobic010G123600 Sobic004G334300--Sobic010G123600 Sobic002G308700 Sobic002G308700 Sobic004G334300--Sobic002G308700 Sobic005G162500 Sobic005G162500 Sobic004G334300--Sobic005G162500 Sobic004G334300--Sobic004G244900 Sobic004G334300--Sobic004G276400
Octagon: transcription factors


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