Gene annotation
Transcriptome id Sobic.003G195000.1
Synonym Sb03g025820, ftsh4
Functional annotation OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed
UniProt C5XNS5
Pfam PF07728 PF01434
Panther DB PTHR23076 PTHR23076:SF73
NCBI CDD -
KEGG Orthology K08955; ATP-dependent metalloprotease
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0006508proteolysis GO:0004222metalloendopeptidase activity


Orthologs (automatic annotation)
TAIR AT2G26140 : FTSH protease 4
RAP-DB (Rice) LOC_Os01g39260.1 : OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed
MaizeGDB (Corn) Zm00025a028453 , Zm00025a038398
Brachypodium KQK08386 , KQK08387 , KQK04566
Barley HORVU3Hr1G049910.8 , HORVU3Hr1G049910.9 , HORVU3Hr1G049910.4 , HORVU3Hr1G049910.5 , HORVU3Hr1G049910.6 , HORVU3Hr1G049910.7 , HORVU3Hr1G049910.1 , HORVU3Hr1G049910.2 , HORVU3Hr1G049910.3
Wheat TraesCS1D02G450300 , TraesCS3A02G205300 , TraesCS3A02G205300 , TraesCS1B02G476600 , TraesCS3D02G210100 , TraesCS3D02G210100 , TraesCS3B02G237400 , TraesCS3B02G237400 , TraesCS1A02G442500
Populus -


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cDNA sequences
Sobic.003G195000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G289800 BAH domain containing protein, putative, expressed -
2 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
3 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
4 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
5 Sobic.002G275700 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
6 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
7 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
8 Sobic.001G289600 BAH domain containing protein, putative, expressed -
9 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
10 Sobic.003G422500 expressed protein -
11 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
12 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
13 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
14 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
15 Sobic.006G199200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
16 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
18 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
19 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
20 Sobic.001G002000 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic003G195000 Sobic003G195000 Sobic001G289800 Sobic001G289800 Sobic003G195000--Sobic001G289800 Sobic001G194200 Sobic001G194200 Sobic003G195000--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic003G195000--Sobic009G053900 Sobic002G146300 Sobic002G146300 Sobic003G195000--Sobic002G146300 Sobic002G275700 Sobic002G275700 Sobic003G195000--Sobic002G275700 Sobic005G001000 Sobic005G001000 Sobic003G195000--Sobic005G001000 Sobic002G142900 Sobic002G142900 Sobic003G195000--Sobic002G142900 Sobic001G289600 Sobic001G289600 Sobic003G195000--Sobic001G289600 Sobic001G192000 Sobic001G192000 Sobic003G195000--Sobic001G192000 Sobic001G289800--Sobic001G289600 Sobic003G422500 Sobic003G422500 Sobic001G289800--Sobic003G422500 Sobic001G289800--Sobic001G194200 Sobic004G291900 Sobic004G291900 Sobic001G289800--Sobic004G291900 Sobic004G034900 Sobic004G034900 Sobic001G289800--Sobic004G034900 Sobic001G002000 Sobic001G002000 Sobic001G289800--Sobic001G002000 Sobic010G010700 Sobic010G010700 Sobic001G289800--Sobic010G010700 Sobic007G062800 Sobic007G062800 Sobic001G289800--Sobic007G062800 Sobic001G289800--Sobic005G001000 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic004G276400 Sobic004G276400 Sobic001G194200--Sobic004G276400 Sobic001G194200--Sobic001G289800 Sobic008G001200 Sobic008G001200 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic001G194200--Sobic004G034900 Sobic009G191000 Sobic009G191000 Sobic009G053900--Sobic009G191000 Sobic003G118200 Sobic003G118200 Sobic009G053900--Sobic003G118200 Sobic002G008900 Sobic002G008900 Sobic009G053900--Sobic002G008900 Sobic009G053900--Sobic003G422500 Sobic001G365900 Sobic001G365900 Sobic009G053900--Sobic001G365900 Sobic009G053900--Sobic001G289600 Sobic009G053900--Sobic010G206900 Sobic007G075400 Sobic007G075400 Sobic009G053900--Sobic007G075400 Sobic001G540400 Sobic001G540400 Sobic009G053900--Sobic001G540400 Sobic003G205200 Sobic003G205200 Sobic002G146300--Sobic003G205200 Sobic001G370900 Sobic001G370900 Sobic002G146300--Sobic001G370900 Sobic010G139600 Sobic010G139600 Sobic002G146300--Sobic010G139600 Sobic002G146300--Sobic005G001000 Sobic004G001500 Sobic004G001500 Sobic002G146300--Sobic004G001500 Sobic002G146300--Sobic008G001200 Sobic002G146300--Sobic001G194200 Sobic002G146300--Sobic007G075400 Sobic009G256400 Sobic009G256400 Sobic002G146300--Sobic009G256400 Sobic002G275700--Sobic001G192000 Sobic002G275700--Sobic001G194200 Sobic007G103100 Sobic007G103100 Sobic002G275700--Sobic007G103100 Sobic006G041600 Sobic006G041600 Sobic002G275700--Sobic006G041600 Sobic009G255700 Sobic009G255700 Sobic002G275700--Sobic009G255700 Sobic002G275700--Sobic003G195000 Sobic002G275700--Sobic001G289800 Sobic001G527800 Sobic001G527800 Sobic002G275700--Sobic001G527800 Sobic003G196300 Sobic003G196300 Sobic002G275700--Sobic003G196300 Sobic005G001000--Sobic001G194200 Sobic005G001000--Sobic002G008900 Sobic005G001000--Sobic001G370900 Sobic005G001000--Sobic003G205200 Sobic005G001000--Sobic004G291900 Sobic003G186000 Sobic003G186000 Sobic005G001000--Sobic003G186000 Sobic005G001000--Sobic008G001200 Sobic005G001000--Sobic003G422500 Sobic005G001000--Sobic009G256400 Sobic004G131300 Sobic004G131300 Sobic002G142900--Sobic004G131300 Sobic001G263600 Sobic001G263600 Sobic002G142900--Sobic001G263600 Sobic002G133300 Sobic002G133300 Sobic002G142900--Sobic002G133300 Sobic002G142900--Sobic003G195000 Sobic007G054800 Sobic007G054800 Sobic002G142900--Sobic007G054800 Sobic005G162500 Sobic005G162500 Sobic002G142900--Sobic005G162500 Sobic003G104000 Sobic003G104000 Sobic002G142900--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic002G142900--Sobic002G256700 Sobic002G335600 Sobic002G335600 Sobic002G142900--Sobic002G335600 Sobic001G289600--Sobic001G540400 Sobic001G289600--Sobic004G034900 Sobic001G289600--Sobic001G289800 Sobic001G289600--Sobic003G422500 Sobic001G289600--Sobic001G365900 Sobic001G289600--Sobic009G191000 Sobic005G008800 Sobic005G008800 Sobic001G289600--Sobic005G008800 Sobic007G105100 Sobic007G105100 Sobic001G289600--Sobic007G105100 Sobic001G289600--Sobic010G010700 Sobic001G192000--Sobic002G275700 Sobic001G192000--Sobic009G255700 Sobic001G192000--Sobic005G162500 Sobic008G088872 Sobic008G088872 Sobic001G192000--Sobic008G088872 Sobic001G333100 Sobic001G333100 Sobic001G192000--Sobic001G333100 Sobic001G192000--Sobic003G195000 Sobic001G192000--Sobic002G146300 Sobic001G192000--Sobic001G370900 Sobic003G221400 Sobic003G221400 Sobic001G192000--Sobic003G221400
Octagon: transcription factors


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