Gene annotation
Transcriptome id Sobic.006G199200.1
Synonym Sb06g027130, NHL8
Functional annotation ara54-like RING finger protein, putative, expressed
UniProt C5YF19
Pfam PF01485 PF05773
Panther DB PTHR11685 PTHR11685:SF121
NCBI CDD KOG1814; Predicted E3 ubiquitin ligase
KEGG Orthology K11971; RNF14, E3 ubiquitin-protein ligase RNF14
Gene Ontology GO:0005515; protein binding GO:0016567protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT1G32340 : NDR1/HIN1-like 8
RAP-DB (Rice) LOC_Os04g50720.1 : ara54-like RING finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a009983
Brachypodium KQJ84316
Barley HORVU1Hr1G008520.1 , HORVU2Hr1G106250.1 , HORVU2Hr1G106250.2 , HORVU2Hr1G106250.3 , HORVU2Hr1G106250.4
Wheat TraesCS2B02G467400 , TraesCS1B02G065800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
2 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
3 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
4 Sobic.001G241100 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
5 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
6 Sobic.010G079900 AT hook-containing DNA-binding protein, putative, expressed -
7 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.006G160300 DNA binding protein, putative, expressed -
9 Sobic.001G289800 BAH domain containing protein, putative, expressed -
10 Sobic.009G017400 "gsn1/LARGE8(Ortholog in rice:Gou et al., 2018(PubMedID : 31659915)@dual specificity protein phosphatase, putative, expressed -
11 Sobic.002G347000 WD domain, G-beta repeat domain containing protein, expressed K14963: WDR5, SWD3, COMPASS component SWD3
12 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
13 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
14 Sobic.001G261501 - -
15 Sobic.001G289600 BAH domain containing protein, putative, expressed -
16 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
17 Sobic.001G498600 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
18 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
19 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
20 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1


Gene co-expression network
sample Sobic006G199200 Sobic006G199200 Sobic003G195000 Sobic003G195000 Sobic006G199200--Sobic003G195000 Sobic010G205800 Sobic010G205800 Sobic006G199200--Sobic010G205800 Sobic001G493200 Sobic001G493200 Sobic006G199200--Sobic001G493200 Sobic001G241100 Sobic001G241100 Sobic006G199200--Sobic001G241100 Sobic005G027400 Sobic005G027400 Sobic006G199200--Sobic005G027400 Sobic010G079900 Sobic010G079900 Sobic006G199200--Sobic010G079900 Sobic001G121200 Sobic001G121200 Sobic006G199200--Sobic001G121200 Sobic006G160300 Sobic006G160300 Sobic006G199200--Sobic006G160300 Sobic001G289800 Sobic001G289800 Sobic006G199200--Sobic001G289800 Sobic003G195000--Sobic001G289800 Sobic001G194200 Sobic001G194200 Sobic003G195000--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic003G195000--Sobic009G053900 Sobic002G146300 Sobic002G146300 Sobic003G195000--Sobic002G146300 Sobic002G275700 Sobic002G275700 Sobic003G195000--Sobic002G275700 Sobic005G001000 Sobic005G001000 Sobic003G195000--Sobic005G001000 Sobic002G142900 Sobic002G142900 Sobic003G195000--Sobic002G142900 Sobic001G289600 Sobic001G289600 Sobic003G195000--Sobic001G289600 Sobic001G192000 Sobic001G192000 Sobic003G195000--Sobic001G192000 Sobic010G205800--Sobic001G121200 Sobic001G390800 Sobic001G390800 Sobic010G205800--Sobic001G390800 Sobic001G124200 Sobic001G124200 Sobic010G205800--Sobic001G124200 Sobic001G007000 Sobic001G007000 Sobic010G205800--Sobic001G007000 Sobic001G000200 Sobic001G000200 Sobic010G205800--Sobic001G000200 Sobic002G262900 Sobic002G262900 Sobic010G205800--Sobic002G262900 Sobic004G274200 Sobic004G274200 Sobic010G205800--Sobic004G274200 Sobic010G205800--Sobic006G199200 Sobic001G079200 Sobic001G079200 Sobic010G205800--Sobic001G079200 Sobic009G084900 Sobic009G084900 Sobic001G493200--Sobic009G084900 Sobic003G266001 Sobic003G266001 Sobic001G493200--Sobic003G266001 Sobic010G059500 Sobic010G059500 Sobic001G493200--Sobic010G059500 Sobic001G433800 Sobic001G433800 Sobic001G493200--Sobic001G433800 Sobic004G072100 Sobic004G072100 Sobic001G493200--Sobic004G072100 Sobic004G096400 Sobic004G096400 Sobic001G493200--Sobic004G096400 Sobic007G132100 Sobic007G132100 Sobic001G493200--Sobic007G132100 Sobic006G077200 Sobic006G077200 Sobic001G493200--Sobic006G077200 Sobic003G408600 Sobic003G408600 Sobic001G493200--Sobic003G408600 Sobic002G294800 Sobic002G294800 Sobic001G241100--Sobic002G294800 Sobic001G241100--Sobic005G027400 Sobic001G241100--Sobic003G195000 Sobic001G241100--Sobic001G289800 Sobic001G268200 Sobic001G268200 Sobic001G241100--Sobic001G268200 Sobic001G241100--Sobic006G199200 Sobic010G147100 Sobic010G147100 Sobic001G241100--Sobic010G147100 Sobic001G241100--Sobic001G289600 Sobic001G241100--Sobic001G079200 Sobic002G309600 Sobic002G309600 Sobic005G027400--Sobic002G309600 Sobic004G065100 Sobic004G065100 Sobic005G027400--Sobic004G065100 Sobic001G451400 Sobic001G451400 Sobic005G027400--Sobic001G451400 Sobic009G132700 Sobic009G132700 Sobic005G027400--Sobic009G132700 Sobic007G117400 Sobic007G117400 Sobic005G027400--Sobic007G117400 Sobic001G219600 Sobic001G219600 Sobic005G027400--Sobic001G219600 Sobic005G027400--Sobic001G289800 Sobic008G047800 Sobic008G047800 Sobic005G027400--Sobic008G047800 Sobic004G006900 Sobic004G006900 Sobic005G027400--Sobic004G006900 Sobic010G079900--Sobic005G027400 Sobic001G309400 Sobic001G309400 Sobic010G079900--Sobic001G309400 Sobic001G260400 Sobic001G260400 Sobic010G079900--Sobic001G260400 Sobic010G079900--Sobic006G199200 Sobic003G086900 Sobic003G086900 Sobic010G079900--Sobic003G086900 Sobic003G184699 Sobic003G184699 Sobic010G079900--Sobic003G184699 Sobic004G142900 Sobic004G142900 Sobic010G079900--Sobic004G142900 Sobic003G139900 Sobic003G139900 Sobic010G079900--Sobic003G139900 Sobic001G222250 Sobic001G222250 Sobic010G079900--Sobic001G222250 Sobic001G121200--Sobic001G390800 Sobic001G121200--Sobic010G205800 Sobic001G121200--Sobic001G268200 Sobic009G113000 Sobic009G113000 Sobic001G121200--Sobic009G113000 Sobic002G111000 Sobic002G111000 Sobic001G121200--Sobic002G111000 Sobic001G121200--Sobic010G147100 Sobic001G207000 Sobic001G207000 Sobic001G121200--Sobic001G207000 Sobic001G146800 Sobic001G146800 Sobic001G121200--Sobic001G146800 Sobic009G056200 Sobic009G056200 Sobic001G121200--Sobic009G056200 Sobic006G160300--Sobic003G195000 Sobic006G160300--Sobic006G199200 Sobic006G160300--Sobic001G121200 Sobic006G160300--Sobic001G268200 Sobic006G160300--Sobic009G056200 Sobic006G160300--Sobic003G086900 Sobic007G193700 Sobic007G193700 Sobic006G160300--Sobic007G193700 Sobic006G160300--Sobic010G147100 Sobic003G220800 Sobic003G220800 Sobic006G160300--Sobic003G220800 Sobic001G289800--Sobic001G289600 Sobic003G422500 Sobic003G422500 Sobic001G289800--Sobic003G422500 Sobic001G289800--Sobic001G194200 Sobic004G291900 Sobic004G291900 Sobic001G289800--Sobic004G291900 Sobic004G034900 Sobic004G034900 Sobic001G289800--Sobic004G034900 Sobic001G002000 Sobic001G002000 Sobic001G289800--Sobic001G002000 Sobic010G010700 Sobic010G010700 Sobic001G289800--Sobic010G010700 Sobic007G062800 Sobic007G062800 Sobic001G289800--Sobic007G062800 Sobic001G289800--Sobic005G001000
Octagon: transcription factors


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