Gene annotation
Transcriptome id Sobic.001G261501.2,Sobic.001G261501.1
Synonym -
Functional annotation -
UniProt A0A1Z5S7V0 , C6JRU1
Pfam PF01833 PF00612 PF03859
Panther DB PTHR23335 PTHR23335:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G22300 : signal responsive 1
RAP-DB (Rice) LOC_Os10g22950.1 : calmodulin-binding transcription activator, putative, expressed
MaizeGDB (Corn) Zm00025a004017 , Zm00025a001041 , Zm00025a017914
Brachypodium KQJ96511 , KQJ96510
Barley HORVU4Hr1G078620.11 , HORVU4Hr1G078620.9 , HORVU4Hr1G078620.5 , HORVU4Hr1G078620.7 , HORVU4Hr1G078620.10 , HORVU4Hr1G078620.13 , HORVU4Hr1G078620.12 , HORVU4Hr1G078620.15 , HORVU4Hr1G078620.14 , HORVU4Hr1G078620.17 , HORVU4Hr1G078620.16 , HORVU4Hr1G078620.8 , HORVU4Hr1G078620.4 , HORVU4Hr1G078620.1 , HORVU4Hr1G078620.3 , HORVU4Hr1G078620.2
Wheat TraesCS4B02G306300 , TraesCS4B02G306300 , TraesCS4B02G306300 , TraesCS4B02G306300 , TraesCS4B02G306300 , TraesCS4B02G306300 , TraesCS4B02G306300 , TraesCS4A02G407100 , TraesCS4A02G407100 , TraesCS4A02G407100 , TraesCS4A02G407100 , TraesCS4A02G407100 , TraesCS4A02G349800 , TraesCS4D02G304500 , TraesCS4D02G304500 , TraesCS4D02G304500 , TraesCS4D02G304500 , TraesCS4D02G304500 , TraesCS4D02G304500 , TraesCS5B02G521100 , TraesCS5B02G521100 , TraesCS5B02G521100
Populus PNT35419 , PNT35420 , PNT35422 , PNT35421


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
2 Sobic.002G380200 calmodulin-binding transcription activator, putative, expressed -
3 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
4 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
5 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
6 Sobic.001G540400 expressed protein -
7 Sobic.007G157000 protein transport protein, putative, expressed K14006: protein transport protein SEC23
8 Sobic.003G422500 expressed protein -
9 Sobic.007G063000 expressed protein -
10 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
11 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
12 Sobic.001G289600 BAH domain containing protein, putative, expressed -
13 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
14 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
15 Sobic.001G289800 BAH domain containing protein, putative, expressed -
16 Sobic.001G313700 expressed protein -
17 Sobic.008G087866 - -
18 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
19 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
20 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -


Gene co-expression network
sample Sobic001G261501 Sobic001G261501 Sobic009G053900 Sobic009G053900 Sobic001G261501--Sobic009G053900 Sobic002G380200 Sobic002G380200 Sobic001G261501--Sobic002G380200 Sobic009G165700 Sobic009G165700 Sobic001G261501--Sobic009G165700 Sobic003G408600 Sobic003G408600 Sobic001G261501--Sobic003G408600 Sobic005G027400 Sobic005G027400 Sobic001G261501--Sobic005G027400 Sobic001G540400 Sobic001G540400 Sobic001G261501--Sobic001G540400 Sobic007G157000 Sobic007G157000 Sobic001G261501--Sobic007G157000 Sobic003G422500 Sobic003G422500 Sobic001G261501--Sobic003G422500 Sobic007G063000 Sobic007G063000 Sobic001G261501--Sobic007G063000 Sobic009G191000 Sobic009G191000 Sobic009G053900--Sobic009G191000 Sobic003G118200 Sobic003G118200 Sobic009G053900--Sobic003G118200 Sobic002G008900 Sobic002G008900 Sobic009G053900--Sobic002G008900 Sobic009G053900--Sobic003G422500 Sobic001G365900 Sobic001G365900 Sobic009G053900--Sobic001G365900 Sobic001G289600 Sobic001G289600 Sobic009G053900--Sobic001G289600 Sobic010G206900 Sobic010G206900 Sobic009G053900--Sobic010G206900 Sobic007G075400 Sobic007G075400 Sobic009G053900--Sobic007G075400 Sobic009G053900--Sobic001G540400 Sobic002G380200--Sobic001G261501 Sobic002G380200--Sobic003G408600 Sobic009G109200 Sobic009G109200 Sobic002G380200--Sobic009G109200 Sobic005G008800 Sobic005G008800 Sobic002G380200--Sobic005G008800 Sobic003G214600 Sobic003G214600 Sobic002G380200--Sobic003G214600 Sobic001G498600 Sobic001G498600 Sobic002G380200--Sobic001G498600 Sobic001G146800 Sobic001G146800 Sobic002G380200--Sobic001G146800 Sobic007G163100 Sobic007G163100 Sobic002G380200--Sobic007G163100 Sobic010G112100 Sobic010G112100 Sobic002G380200--Sobic010G112100 Sobic009G165700--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic009G165700--Sobic010G247800 Sobic009G165700--Sobic010G206900 Sobic003G166750 Sobic003G166750 Sobic009G165700--Sobic003G166750 Sobic008G087866 Sobic008G087866 Sobic009G165700--Sobic008G087866 Sobic001G451400 Sobic001G451400 Sobic009G165700--Sobic001G451400 Sobic003G170900 Sobic003G170900 Sobic009G165700--Sobic003G170900 Sobic001G534700 Sobic001G534700 Sobic009G165700--Sobic001G534700 Sobic008G001200 Sobic008G001200 Sobic009G165700--Sobic008G001200 Sobic003G408600--Sobic001G540400 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic003G408600--Sobic005G112300 Sobic003G408600--Sobic007G163100 Sobic003G408600--Sobic010G112100 Sobic001G058700 Sobic001G058700 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic002G045600 Sobic002G045600 Sobic003G408600--Sobic002G045600 Sobic002G309600 Sobic002G309600 Sobic005G027400--Sobic002G309600 Sobic004G065100 Sobic004G065100 Sobic005G027400--Sobic004G065100 Sobic005G027400--Sobic001G451400 Sobic009G132700 Sobic009G132700 Sobic005G027400--Sobic009G132700 Sobic007G117400 Sobic007G117400 Sobic005G027400--Sobic007G117400 Sobic001G219600 Sobic001G219600 Sobic005G027400--Sobic001G219600 Sobic001G289800 Sobic001G289800 Sobic005G027400--Sobic001G289800 Sobic008G047800 Sobic008G047800 Sobic005G027400--Sobic008G047800 Sobic004G006900 Sobic004G006900 Sobic005G027400--Sobic004G006900 Sobic001G540400--Sobic001G289600 Sobic001G540400--Sobic003G408600 Sobic007G062800 Sobic007G062800 Sobic001G540400--Sobic007G062800 Sobic001G540400--Sobic005G008800 Sobic004G034900 Sobic004G034900 Sobic001G540400--Sobic004G034900 Sobic001G540400--Sobic005G112300 Sobic001G540400--Sobic003G422500 Sobic001G540400--Sobic002G397500 Sobic001G540400--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic007G157000--Sobic010G139000 Sobic001G311500 Sobic001G311500 Sobic007G157000--Sobic001G311500 Sobic007G157000--Sobic010G112100 Sobic007G157000--Sobic005G008800 Sobic004G314000 Sobic004G314000 Sobic007G157000--Sobic004G314000 Sobic007G157000--Sobic009G109200 Sobic007G157000--Sobic001G219600 Sobic007G157000--Sobic002G397500 Sobic007G157000--Sobic003G408600 Sobic002G411600 Sobic002G411600 Sobic003G422500--Sobic002G411600 Sobic003G422500--Sobic009G191000 Sobic003G422500--Sobic001G289600 Sobic003G422500--Sobic009G165700 Sobic003G422500--Sobic002G008900 Sobic003G422500--Sobic004G034900 Sobic003G422500--Sobic001G289800 Sobic003G422500--Sobic001G540400 Sobic008G132600 Sobic008G132600 Sobic003G422500--Sobic008G132600 Sobic001G433800 Sobic001G433800 Sobic007G063000--Sobic001G433800 Sobic003G196300 Sobic003G196300 Sobic007G063000--Sobic003G196300 Sobic003G360400 Sobic003G360400 Sobic007G063000--Sobic003G360400 Sobic007G063000--Sobic009G109200 Sobic007G063000--Sobic009G165700 Sobic007G063000--Sobic010G112100 Sobic007G063000--Sobic003G166750 Sobic004G242400 Sobic004G242400 Sobic007G063000--Sobic004G242400 Sobic009G256300 Sobic009G256300 Sobic007G063000--Sobic009G256300
Octagon: transcription factors


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