Gene annotation
Transcriptome id Sobic.002G380200.1,Sobic.002G380200.2,Sobic.002G380200.3
Synonym Sb02g039710, CAMTA3, SR1
Functional annotation calmodulin-binding transcription activator, putative, expressed
UniProt A0A1B6QFM6 , A0A1B6QFQ9 , A0A1B6QFM1
Pfam PF01833 PF00612 PF03859
Panther DB PTHR23335 PTHR23335:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G09410 : ethylene induced calmodulin binding protein,Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
RAP-DB (Rice) LOC_Os07g43030.1 : calmodulin-binding transcription activator, putative, expressed
MaizeGDB (Corn) Zm00025a048894 , Zm00025a048796 , Zm00025a052095 , Zm00025a053912 , Zm00025a046805 , Zm00025a020943
Brachypodium KQK21448 , KQK15232
Barley HORVU2Hr1G029780.2 , HORVU2Hr1G029780.7 , HORVU2Hr1G029780.10 , HORVU2Hr1G029780.11 , HORVU2Hr1G029780.3 , HORVU2Hr1G029780.1 , HORVU2Hr1G029780.6 , HORVU2Hr1G029780.4 , HORVU2Hr1G029780.5 , HORVU2Hr1G029780.8 , HORVU2Hr1G029780.9
Wheat TraesCS2A02G163000 , TraesCS2B02G188800 , TraesCS2D02G169900 , TraesCS2D02G169900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G261501 - -
2 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
3 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
4 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
5 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
6 Sobic.001G498600 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
7 Sobic.001G146800 expressed protein -
8 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
9 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
10 Sobic.004G200200 joka2, putative, expressed K17987: next to BRCA1 gene 1 protein
11 Sobic.010G112000 expressed protein K17906: autophagy-related protein 2
12 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
13 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
14 Sobic.001G540400 expressed protein -
15 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
16 Sobic.004G209600 SWIM zinc finger family protein, putative, expressed -
17 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
18 Sobic.002G366400 histone deacetylase, putative, expressed K11407: histone deacetylase 6
19 Sobic.003G194500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
20 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C


Gene co-expression network
sample Sobic002G380200 Sobic002G380200 Sobic001G261501 Sobic001G261501 Sobic002G380200--Sobic001G261501 Sobic003G408600 Sobic003G408600 Sobic002G380200--Sobic003G408600 Sobic009G109200 Sobic009G109200 Sobic002G380200--Sobic009G109200 Sobic005G008800 Sobic005G008800 Sobic002G380200--Sobic005G008800 Sobic003G214600 Sobic003G214600 Sobic002G380200--Sobic003G214600 Sobic001G498600 Sobic001G498600 Sobic002G380200--Sobic001G498600 Sobic001G146800 Sobic001G146800 Sobic002G380200--Sobic001G146800 Sobic007G163100 Sobic007G163100 Sobic002G380200--Sobic007G163100 Sobic010G112100 Sobic010G112100 Sobic002G380200--Sobic010G112100 Sobic009G053900 Sobic009G053900 Sobic001G261501--Sobic009G053900 Sobic001G261501--Sobic002G380200 Sobic009G165700 Sobic009G165700 Sobic001G261501--Sobic009G165700 Sobic001G261501--Sobic003G408600 Sobic005G027400 Sobic005G027400 Sobic001G261501--Sobic005G027400 Sobic001G540400 Sobic001G540400 Sobic001G261501--Sobic001G540400 Sobic007G157000 Sobic007G157000 Sobic001G261501--Sobic007G157000 Sobic003G422500 Sobic003G422500 Sobic001G261501--Sobic003G422500 Sobic007G063000 Sobic007G063000 Sobic001G261501--Sobic007G063000 Sobic003G408600--Sobic001G540400 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic003G408600--Sobic005G112300 Sobic003G408600--Sobic007G163100 Sobic003G408600--Sobic010G112100 Sobic001G058700 Sobic001G058700 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic002G045600 Sobic002G045600 Sobic003G408600--Sobic002G045600 Sobic010G105200 Sobic010G105200 Sobic009G109200--Sobic010G105200 Sobic004G242400 Sobic004G242400 Sobic009G109200--Sobic004G242400 Sobic009G109200--Sobic002G397500 Sobic001G542400 Sobic001G542400 Sobic009G109200--Sobic001G542400 Sobic009G109200--Sobic001G540400 Sobic009G109200--Sobic005G008800 Sobic004G276400 Sobic004G276400 Sobic009G109200--Sobic004G276400 Sobic009G109200--Sobic003G408600 Sobic009G109200--Sobic010G112100 Sobic005G008800--Sobic001G540400 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic007G062800 Sobic007G062800 Sobic005G008800--Sobic007G062800 Sobic001G289600 Sobic001G289600 Sobic005G008800--Sobic001G289600 Sobic004G314000 Sobic004G314000 Sobic005G008800--Sobic004G314000 Sobic008G009700 Sobic008G009700 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic005G008800--Sobic009G109200 Sobic005G200800 Sobic005G200800 Sobic003G214600--Sobic005G200800 Sobic002G029100 Sobic002G029100 Sobic003G214600--Sobic002G029100 Sobic006G088200 Sobic006G088200 Sobic003G214600--Sobic006G088200 Sobic003G214600--Sobic003G408600 Sobic009G255600 Sobic009G255600 Sobic003G214600--Sobic009G255600 Sobic003G214600--Sobic005G008800 Sobic007G183300 Sobic007G183300 Sobic003G214600--Sobic007G183300 Sobic003G214600--Sobic007G163100 Sobic003G360400 Sobic003G360400 Sobic003G214600--Sobic003G360400 Sobic010G112000 Sobic010G112000 Sobic001G498600--Sobic010G112000 Sobic006G131500 Sobic006G131500 Sobic001G498600--Sobic006G131500 Sobic001G498600--Sobic001G146800 Sobic001G498600--Sobic005G008800 Sobic002G134200 Sobic002G134200 Sobic001G498600--Sobic002G134200 Sobic001G498600--Sobic001G058700 Sobic004G317100 Sobic004G317100 Sobic001G498600--Sobic004G317100 Sobic007G193700 Sobic007G193700 Sobic001G498600--Sobic007G193700 Sobic007G172400 Sobic007G172400 Sobic001G498600--Sobic007G172400 Sobic001G146800--Sobic001G058700 Sobic004G200200 Sobic004G200200 Sobic001G146800--Sobic004G200200 Sobic001G146800--Sobic001G498600 Sobic004G347400 Sobic004G347400 Sobic001G146800--Sobic004G347400 Sobic001G146800--Sobic010G112000 Sobic001G178700 Sobic001G178700 Sobic001G146800--Sobic001G178700 Sobic004G113400 Sobic004G113400 Sobic001G146800--Sobic004G113400 Sobic001G146800--Sobic006G131500 Sobic001G146800--Sobic007G172400 Sobic007G163100--Sobic003G408600 Sobic008G118200 Sobic008G118200 Sobic007G163100--Sobic008G118200 Sobic007G163100--Sobic002G045600 Sobic001G117200 Sobic001G117200 Sobic007G163100--Sobic001G117200 Sobic003G072200 Sobic003G072200 Sobic007G163100--Sobic003G072200 Sobic007G163100--Sobic003G422500 Sobic007G163100--Sobic001G540400 Sobic007G163100--Sobic001G289800 Sobic007G163100--Sobic004G113400 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic009G256300 Sobic009G256300 Sobic010G112100--Sobic009G256300 Sobic010G112100--Sobic003G408600 Sobic001G433800 Sobic001G433800 Sobic010G112100--Sobic001G433800 Sobic010G112100--Sobic001G540400 Sobic010G112100--Sobic007G062800 Sobic010G112100--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic010G112100--Sobic003G389200
Octagon: transcription factors


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