Gene annotation
Transcriptome id Sobic.010G112000.1
Synonym ATG2, ATATG2
Functional annotation expressed protein
UniProt A0A194YIG8
Pfam PF12624 PF09333
Panther DB PTHR13190 PTHR13190:SF1
NCBI CDD KOG2993; Cytoplasm to vacuole targeting protein
KEGG Orthology K17906; autophagy-related protein 2
Gene Ontology GO:0006914; autophagy


Orthologs (automatic annotation)
TAIR AT3G19190 : autophagy 2
RAP-DB (Rice) LOC_Os06g15700.1 : expressed protein
MaizeGDB (Corn) Zm00025a050415 , Zm00025a042697
Brachypodium KQK18643 , KQK18642
Barley HORVU6Hr1G034660.7 , HORVU6Hr1G034660.6 , HORVU6Hr1G034660.4 , HORVU6Hr1G034660.3 , HORVU6Hr1G034660.2 , HORVU6Hr1G034660.1 , HORVU6Hr1G034660.9 , HORVU6Hr1G034660.8 , HORVU6Hr1G034660.13 , HORVU6Hr1G034660.12 , HORVU7Hr1G042410.1 , HORVU7Hr1G042410.2 , HORVU7Hr1G042410.3 , HORVU7Hr1G042410.4 , HORVU7Hr1G042410.5 , HORVU7Hr1G042410.6 , HORVU6Hr1G034660.14 , HORVU6Hr1G034660.5 , HORVU6Hr1G034660.11 , HORVU6Hr1G034660.10
Wheat TraesCS7A02G208300 , TraesCS6B02G197400 , TraesCS6A02G169400 , TraesCS6D02G159300 , TraesCS7B02G115500 , TraesCS7B02G115500 , TraesCS7D02G210700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G498600 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
2 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
3 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
4 Sobic.001G540400 expressed protein -
5 Sobic.001G289600 BAH domain containing protein, putative, expressed -
6 Sobic.001G146800 expressed protein -
7 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
8 Sobic.001G280900 expressed protein -
9 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
10 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
11 Sobic.001G178700 NBS-LRR disease resistance protein, putative, expressed -
12 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
13 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
14 Sobic.007G062800 SET domain containing protein, expressed -
15 Sobic.003G422500 expressed protein -
16 Sobic.010G224000 molybdenum cofactor sulfurase, putative, expressed K15631: molybdenum cofactor sulfurtransferase
17 Sobic.004G329400 formin, putative, expressed -
18 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
19 Sobic.010G010700 PHD-finger family protein, expressed -
20 Sobic.010G153700 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant


Gene co-expression network
sample Sobic010G112000 Sobic010G112000 Sobic001G498600 Sobic001G498600 Sobic010G112000--Sobic001G498600 Sobic004G034900 Sobic004G034900 Sobic010G112000--Sobic004G034900 Sobic002G008900 Sobic002G008900 Sobic010G112000--Sobic002G008900 Sobic001G540400 Sobic001G540400 Sobic010G112000--Sobic001G540400 Sobic001G289600 Sobic001G289600 Sobic010G112000--Sobic001G289600 Sobic001G146800 Sobic001G146800 Sobic010G112000--Sobic001G146800 Sobic005G008800 Sobic005G008800 Sobic010G112000--Sobic005G008800 Sobic001G280900 Sobic001G280900 Sobic010G112000--Sobic001G280900 Sobic001G058700 Sobic001G058700 Sobic010G112000--Sobic001G058700 Sobic001G498600--Sobic010G112000 Sobic006G131500 Sobic006G131500 Sobic001G498600--Sobic006G131500 Sobic001G498600--Sobic001G146800 Sobic001G498600--Sobic005G008800 Sobic002G134200 Sobic002G134200 Sobic001G498600--Sobic002G134200 Sobic001G498600--Sobic001G058700 Sobic004G317100 Sobic004G317100 Sobic001G498600--Sobic004G317100 Sobic007G193700 Sobic007G193700 Sobic001G498600--Sobic007G193700 Sobic007G172400 Sobic007G172400 Sobic001G498600--Sobic007G172400 Sobic004G034900--Sobic001G289600 Sobic010G206900 Sobic010G206900 Sobic004G034900--Sobic010G206900 Sobic010G010700 Sobic010G010700 Sobic004G034900--Sobic010G010700 Sobic002G411600 Sobic002G411600 Sobic004G034900--Sobic002G411600 Sobic004G034900--Sobic001G540400 Sobic003G422500 Sobic003G422500 Sobic004G034900--Sobic003G422500 Sobic004G276400 Sobic004G276400 Sobic004G034900--Sobic004G276400 Sobic004G034900--Sobic002G008900 Sobic007G062800 Sobic007G062800 Sobic004G034900--Sobic007G062800 Sobic009G191000 Sobic009G191000 Sobic002G008900--Sobic009G191000 Sobic002G008900--Sobic002G411600 Sobic002G008900--Sobic007G062800 Sobic002G008900--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic002G008900--Sobic005G001000 Sobic002G008900--Sobic010G010700 Sobic002G008900--Sobic004G034900 Sobic002G008900--Sobic010G206900 Sobic009G053900 Sobic009G053900 Sobic002G008900--Sobic009G053900 Sobic001G540400--Sobic001G289600 Sobic003G408600 Sobic003G408600 Sobic001G540400--Sobic003G408600 Sobic001G540400--Sobic007G062800 Sobic001G540400--Sobic005G008800 Sobic001G540400--Sobic004G034900 Sobic005G112300 Sobic005G112300 Sobic001G540400--Sobic005G112300 Sobic001G540400--Sobic003G422500 Sobic002G397500 Sobic002G397500 Sobic001G540400--Sobic002G397500 Sobic010G112100 Sobic010G112100 Sobic001G540400--Sobic010G112100 Sobic001G289600--Sobic001G540400 Sobic001G289600--Sobic004G034900 Sobic001G289800 Sobic001G289800 Sobic001G289600--Sobic001G289800 Sobic001G289600--Sobic003G422500 Sobic001G365900 Sobic001G365900 Sobic001G289600--Sobic001G365900 Sobic001G289600--Sobic009G191000 Sobic001G289600--Sobic005G008800 Sobic007G105100 Sobic007G105100 Sobic001G289600--Sobic007G105100 Sobic001G289600--Sobic010G010700 Sobic001G146800--Sobic001G058700 Sobic004G200200 Sobic004G200200 Sobic001G146800--Sobic004G200200 Sobic001G146800--Sobic001G498600 Sobic004G347400 Sobic004G347400 Sobic001G146800--Sobic004G347400 Sobic001G146800--Sobic010G112000 Sobic001G178700 Sobic001G178700 Sobic001G146800--Sobic001G178700 Sobic004G113400 Sobic004G113400 Sobic001G146800--Sobic004G113400 Sobic001G146800--Sobic006G131500 Sobic001G146800--Sobic007G172400 Sobic005G008800--Sobic001G540400 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic005G008800--Sobic007G062800 Sobic005G008800--Sobic001G289600 Sobic004G314000 Sobic004G314000 Sobic005G008800--Sobic004G314000 Sobic008G009700 Sobic008G009700 Sobic005G008800--Sobic008G009700 Sobic005G008800--Sobic001G289800 Sobic009G109200 Sobic009G109200 Sobic005G008800--Sobic009G109200 Sobic001G280900--Sobic001G540400 Sobic001G280900--Sobic005G112300 Sobic001G280900--Sobic002G397500 Sobic001G280900--Sobic003G408600 Sobic001G280900--Sobic009G109200 Sobic001G280900--Sobic005G008800 Sobic001G280900--Sobic007G062800 Sobic001G280900--Sobic001G058700 Sobic001G050600 Sobic001G050600 Sobic001G280900--Sobic001G050600 Sobic001G058700--Sobic003G408600 Sobic001G058700--Sobic007G172400 Sobic001G058700--Sobic001G050600 Sobic001G058700--Sobic007G062800 Sobic001G058700--Sobic001G540400 Sobic001G058700--Sobic005G008800 Sobic001G058700--Sobic004G347400 Sobic005G028600 Sobic005G028600 Sobic001G058700--Sobic005G028600 Sobic001G219900 Sobic001G219900 Sobic001G058700--Sobic001G219900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.