Gene annotation
Transcriptome id Sobic.001G146800.1
Synonym Sb01g012790
Functional annotation expressed protein
UniProt A0A1B6QIZ8
Pfam PF09746
Panther DB PTHR21650 PTHR21650:SF4
NCBI CDD KOG2092; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G60995 : -
RAP-DB (Rice) LOC_Os03g45770.1 : expressed protein
MaizeGDB (Corn) Zm00025a017192
Brachypodium KQK13887 , PNT74346
Barley HORVU4Hr1G002460.18 , HORVU4Hr1G002460.19 , HORVU4Hr1G002460.10 , HORVU4Hr1G002460.11 , HORVU4Hr1G002460.12 , HORVU4Hr1G002460.13 , HORVU4Hr1G002460.14 , HORVU4Hr1G002460.15 , HORVU4Hr1G002460.16 , HORVU4Hr1G002460.17 , HORVU4Hr1G002460.8 , HORVU4Hr1G002460.9 , HORVU4Hr1G002460.2 , HORVU4Hr1G002460.3 , HORVU4Hr1G002460.1 , HORVU4Hr1G002460.6 , HORVU4Hr1G002460.7 , HORVU4Hr1G002460.4 , HORVU4Hr1G002460.5 , HORVU4Hr1G002460.21 , HORVU4Hr1G002460.20 , HORVU4Hr1G002460.23 , HORVU4Hr1G002460.22
Wheat TraesCS4D02G014800 , TraesCS4A02G297300 , TraesCS4D02G014800 , TraesCS4A02G297300 , TraesCS4D02G014800 , TraesCS4B02G016400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
2 Sobic.004G200200 joka2, putative, expressed K17987: next to BRCA1 gene 1 protein
3 Sobic.001G498600 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
4 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
5 Sobic.010G112000 expressed protein K17906: autophagy-related protein 2
6 Sobic.001G178700 NBS-LRR disease resistance protein, putative, expressed -
7 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
8 Sobic.006G131500 serine/threonine-protein kinase GCN2, putative, expressed K16196: eukaryotic translation initiation factor 2-alpha kinase 4
9 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
10 Sobic.009G113000 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
11 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
12 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
13 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
14 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
15 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.009G010600 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
17 Sobic.002G380200 calmodulin-binding transcription activator, putative, expressed -
18 Sobic.004G329400 formin, putative, expressed -
19 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
20 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4


Gene co-expression network
sample Sobic001G146800 Sobic001G146800 Sobic001G058700 Sobic001G058700 Sobic001G146800--Sobic001G058700 Sobic004G200200 Sobic004G200200 Sobic001G146800--Sobic004G200200 Sobic001G498600 Sobic001G498600 Sobic001G146800--Sobic001G498600 Sobic004G347400 Sobic004G347400 Sobic001G146800--Sobic004G347400 Sobic010G112000 Sobic010G112000 Sobic001G146800--Sobic010G112000 Sobic001G178700 Sobic001G178700 Sobic001G146800--Sobic001G178700 Sobic004G113400 Sobic004G113400 Sobic001G146800--Sobic004G113400 Sobic006G131500 Sobic006G131500 Sobic001G146800--Sobic006G131500 Sobic007G172400 Sobic007G172400 Sobic001G146800--Sobic007G172400 Sobic003G408600 Sobic003G408600 Sobic001G058700--Sobic003G408600 Sobic001G058700--Sobic007G172400 Sobic001G050600 Sobic001G050600 Sobic001G058700--Sobic001G050600 Sobic007G062800 Sobic007G062800 Sobic001G058700--Sobic007G062800 Sobic001G540400 Sobic001G540400 Sobic001G058700--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic001G058700--Sobic005G008800 Sobic001G058700--Sobic004G347400 Sobic005G028600 Sobic005G028600 Sobic001G058700--Sobic005G028600 Sobic001G219900 Sobic001G219900 Sobic001G058700--Sobic001G219900 Sobic002G045600 Sobic002G045600 Sobic004G200200--Sobic002G045600 Sobic004G200200--Sobic001G146800 Sobic003G139900 Sobic003G139900 Sobic004G200200--Sobic003G139900 Sobic004G200200--Sobic003G408600 Sobic002G008900 Sobic002G008900 Sobic004G200200--Sobic002G008900 Sobic009G191000 Sobic009G191000 Sobic004G200200--Sobic009G191000 Sobic004G200200--Sobic001G058700 Sobic001G289800 Sobic001G289800 Sobic004G200200--Sobic001G289800 Sobic003G422500 Sobic003G422500 Sobic004G200200--Sobic003G422500 Sobic001G498600--Sobic010G112000 Sobic001G498600--Sobic006G131500 Sobic001G498600--Sobic001G146800 Sobic001G498600--Sobic005G008800 Sobic002G134200 Sobic002G134200 Sobic001G498600--Sobic002G134200 Sobic001G498600--Sobic001G058700 Sobic004G317100 Sobic004G317100 Sobic001G498600--Sobic004G317100 Sobic007G193700 Sobic007G193700 Sobic001G498600--Sobic007G193700 Sobic001G498600--Sobic007G172400 Sobic004G347400--Sobic003G422500 Sobic004G347400--Sobic001G058700 Sobic003G118200 Sobic003G118200 Sobic004G347400--Sobic003G118200 Sobic001G114000 Sobic001G114000 Sobic004G347400--Sobic001G114000 Sobic004G347400--Sobic007G172400 Sobic004G331100 Sobic004G331100 Sobic004G347400--Sobic004G331100 Sobic009G053900 Sobic009G053900 Sobic004G347400--Sobic009G053900 Sobic001G065000 Sobic001G065000 Sobic004G347400--Sobic001G065000 Sobic001G474600 Sobic001G474600 Sobic004G347400--Sobic001G474600 Sobic010G112000--Sobic001G498600 Sobic004G034900 Sobic004G034900 Sobic010G112000--Sobic004G034900 Sobic010G112000--Sobic002G008900 Sobic010G112000--Sobic001G540400 Sobic001G289600 Sobic001G289600 Sobic010G112000--Sobic001G289600 Sobic010G112000--Sobic001G146800 Sobic010G112000--Sobic005G008800 Sobic001G280900 Sobic001G280900 Sobic010G112000--Sobic001G280900 Sobic010G112000--Sobic001G058700 Sobic001G178700--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic001G178700--Sobic009G010600 Sobic001G248300 Sobic001G248300 Sobic001G178700--Sobic001G248300 Sobic001G291000 Sobic001G291000 Sobic001G178700--Sobic001G291000 Sobic001G178700--Sobic001G474600 Sobic001G178700--Sobic001G146800 Sobic001G178700--Sobic010G112000 Sobic001G178700--Sobic007G172400 Sobic004G329400 Sobic004G329400 Sobic001G178700--Sobic004G329400 Sobic004G113400--Sobic009G010600 Sobic004G113400--Sobic003G408600 Sobic004G113400--Sobic004G329400 Sobic004G113400--Sobic001G058700 Sobic008G099800 Sobic008G099800 Sobic004G113400--Sobic008G099800 Sobic004G113400--Sobic001G178700 Sobic001G117200 Sobic001G117200 Sobic004G113400--Sobic001G117200 Sobic001G534800 Sobic001G534800 Sobic004G113400--Sobic001G534800 Sobic002G430000 Sobic002G430000 Sobic004G113400--Sobic002G430000 Sobic006G131500--Sobic005G008800 Sobic006G131500--Sobic001G498600 Sobic004G209600 Sobic004G209600 Sobic006G131500--Sobic004G209600 Sobic003G280800 Sobic003G280800 Sobic006G131500--Sobic003G280800 Sobic006G216800 Sobic006G216800 Sobic006G131500--Sobic006G216800 Sobic001G241200 Sobic001G241200 Sobic006G131500--Sobic001G241200 Sobic006G131500--Sobic002G134200 Sobic006G131500--Sobic001G146800 Sobic001G072500 Sobic001G072500 Sobic006G131500--Sobic001G072500 Sobic007G172400--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic007G172400--Sobic002G071500 Sobic007G172400--Sobic001G050600 Sobic007G172400--Sobic004G347400 Sobic002G419800 Sobic002G419800 Sobic007G172400--Sobic002G419800 Sobic007G172400--Sobic001G219900 Sobic007G172400--Sobic004G113400 Sobic007G172400--Sobic001G474600 Sobic007G172400--Sobic003G408600
Octagon: transcription factors


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