Gene annotation
Transcriptome id Sobic.006G131500.3,Sobic.006G131500.1,Sobic.006G131500.4,Sobic.006G131500.2
Synonym GCN2
Functional annotation serine/threonine-protein kinase GCN2, putative, expressed
UniProt A0A1B6PLT6
Pfam PF12745 PF05773 PF13393 PF07714
Panther DB PTHR11042 PTHR11042:SF96
NCBI CDD -
KEGG Orthology K16196; eukaryotic translation initiation factor 2-alpha kinase 4
Gene Ontology GO:0005515; protein binding GO:0006468protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G59410 : protein kinase family protein
RAP-DB (Rice) LOC_Os04g41510.1 : serine/threonine-protein kinase GCN2, putative, expressed
MaizeGDB (Corn) Zm00025a010862
Brachypodium KQJ83324 , KQJ83325 , KQJ83323 , PNT61362 , PNT61363
Barley HORVU2Hr1G084930.38 , HORVU2Hr1G084930.39 , HORVU2Hr1G084930.34 , HORVU2Hr1G084930.35 , HORVU2Hr1G084930.36 , HORVU2Hr1G084930.37 , HORVU2Hr1G084930.30 , HORVU2Hr1G084930.31 , HORVU2Hr1G084930.32 , HORVU2Hr1G084930.33 , HORVU2Hr1G084930.40 , HORVU2Hr1G084930.43 , HORVU2Hr1G084930.41 , HORVU2Hr1G084930.42 , HORVU2Hr1G084930.16 , HORVU2Hr1G084930.17 , HORVU2Hr1G084930.14 , HORVU2Hr1G084930.15 , HORVU2Hr1G084930.12 , HORVU2Hr1G084930.13 , HORVU2Hr1G084930.10 , HORVU2Hr1G084930.11 , HORVU2Hr1G084930.18 , HORVU2Hr1G084930.19 , HORVU2Hr1G084930.44 , HORVU2Hr1G084930.29 , HORVU2Hr1G084930.28 , HORVU2Hr1G084930.27 , HORVU2Hr1G084930.26 , HORVU2Hr1G084930.25 , HORVU2Hr1G084930.24 , HORVU2Hr1G084930.23 , HORVU2Hr1G084930.22 , HORVU2Hr1G084930.21 , HORVU2Hr1G084930.20 , HORVU2Hr1G084930.4 , HORVU2Hr1G084930.5 , HORVU2Hr1G084930.6 , HORVU2Hr1G084930.7 , HORVU2Hr1G084930.1 , HORVU2Hr1G084930.2 , HORVU2Hr1G084930.3 , HORVU2Hr1G084930.8 , HORVU2Hr1G084930.9
Wheat TraesCS2A02G349200 , TraesCS2A02G349200 , TraesCS2A02G349200 , TraesCS2D02G347600 , TraesCS2D02G347600 , TraesCS2D02G347600 , TraesCS2B02G367600 , TraesCS2B02G367600 , TraesCS2B02G367600 , TraesCS2B02G367600
Populus PNT28592 , PNT28593 , PNT28594 , PNT28595


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cDNA sequences
Sobic.006G131500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
2 Sobic.001G498600 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
3 Sobic.004G209600 SWIM zinc finger family protein, putative, expressed -
4 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
5 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
6 Sobic.001G241200 protein kinase domain containing protein, expressed -
7 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
8 Sobic.001G146800 expressed protein -
9 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
10 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
11 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
12 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
13 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
14 Sobic.002G053000 expressed protein -
15 Sobic.006G032500 - -
16 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
17 Sobic.010G112000 expressed protein K17906: autophagy-related protein 2
18 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
19 Sobic.004G314000 expressed protein -
20 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1


Gene co-expression network
sample Sobic006G131500 Sobic006G131500 Sobic005G008800 Sobic005G008800 Sobic006G131500--Sobic005G008800 Sobic001G498600 Sobic001G498600 Sobic006G131500--Sobic001G498600 Sobic004G209600 Sobic004G209600 Sobic006G131500--Sobic004G209600 Sobic003G280800 Sobic003G280800 Sobic006G131500--Sobic003G280800 Sobic006G216800 Sobic006G216800 Sobic006G131500--Sobic006G216800 Sobic001G241200 Sobic001G241200 Sobic006G131500--Sobic001G241200 Sobic002G134200 Sobic002G134200 Sobic006G131500--Sobic002G134200 Sobic001G146800 Sobic001G146800 Sobic006G131500--Sobic001G146800 Sobic001G072500 Sobic001G072500 Sobic006G131500--Sobic001G072500 Sobic001G540400 Sobic001G540400 Sobic005G008800--Sobic001G540400 Sobic003G408600 Sobic003G408600 Sobic005G008800--Sobic003G408600 Sobic005G112300 Sobic005G112300 Sobic005G008800--Sobic005G112300 Sobic007G062800 Sobic007G062800 Sobic005G008800--Sobic007G062800 Sobic001G289600 Sobic001G289600 Sobic005G008800--Sobic001G289600 Sobic004G314000 Sobic004G314000 Sobic005G008800--Sobic004G314000 Sobic008G009700 Sobic008G009700 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic009G109200 Sobic009G109200 Sobic005G008800--Sobic009G109200 Sobic010G112000 Sobic010G112000 Sobic001G498600--Sobic010G112000 Sobic001G498600--Sobic006G131500 Sobic001G498600--Sobic001G146800 Sobic001G498600--Sobic005G008800 Sobic001G498600--Sobic002G134200 Sobic001G058700 Sobic001G058700 Sobic001G498600--Sobic001G058700 Sobic004G317100 Sobic004G317100 Sobic001G498600--Sobic004G317100 Sobic007G193700 Sobic007G193700 Sobic001G498600--Sobic007G193700 Sobic007G172400 Sobic007G172400 Sobic001G498600--Sobic007G172400 Sobic010G139000 Sobic010G139000 Sobic004G209600--Sobic010G139000 Sobic004G209600--Sobic004G314000 Sobic010G010700 Sobic010G010700 Sobic004G209600--Sobic010G010700 Sobic007G117400 Sobic007G117400 Sobic004G209600--Sobic007G117400 Sobic004G209600--Sobic005G008800 Sobic004G209600--Sobic002G134200 Sobic004G209600--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic004G209600--Sobic004G242400 Sobic004G209600--Sobic003G280800 Sobic002G309600 Sobic002G309600 Sobic003G280800--Sobic002G309600 Sobic001G071400 Sobic001G071400 Sobic003G280800--Sobic001G071400 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic001G474600 Sobic001G474600 Sobic003G280800--Sobic001G474600 Sobic003G280800--Sobic007G117400 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic002G133400 Sobic002G133400 Sobic006G216800--Sobic002G133400 Sobic007G116200 Sobic007G116200 Sobic006G216800--Sobic007G116200 Sobic006G216800--Sobic002G309600 Sobic006G216800--Sobic002G134200 Sobic003G332800 Sobic003G332800 Sobic006G216800--Sobic003G332800 Sobic006G216800--Sobic005G112300 Sobic006G216800--Sobic003G280800 Sobic006G216800--Sobic010G139000 Sobic010G277500 Sobic010G277500 Sobic006G216800--Sobic010G277500 Sobic001G241200--Sobic007G117400 Sobic001G241200--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic001G241200--Sobic004G065100 Sobic001G241200--Sobic002G309600 Sobic001G241200--Sobic005G008800 Sobic001G241200--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic001G241200--Sobic001G154900 Sobic001G241200--Sobic003G119000 Sobic001G241200--Sobic001G540400 Sobic002G134200--Sobic001G071400 Sobic002G134200--Sobic002G309600 Sobic002G134200--Sobic003G280800 Sobic002G134200--Sobic006G216800 Sobic002G134200--Sobic002G133400 Sobic008G047800 Sobic008G047800 Sobic002G134200--Sobic008G047800 Sobic002G134200--Sobic005G008800 Sobic009G191000 Sobic009G191000 Sobic002G134200--Sobic009G191000 Sobic002G008900 Sobic002G008900 Sobic002G134200--Sobic002G008900 Sobic001G146800--Sobic001G058700 Sobic004G200200 Sobic004G200200 Sobic001G146800--Sobic004G200200 Sobic001G146800--Sobic001G498600 Sobic004G347400 Sobic004G347400 Sobic001G146800--Sobic004G347400 Sobic001G146800--Sobic010G112000 Sobic001G178700 Sobic001G178700 Sobic001G146800--Sobic001G178700 Sobic004G113400 Sobic004G113400 Sobic001G146800--Sobic004G113400 Sobic001G146800--Sobic006G131500 Sobic001G146800--Sobic007G172400 Sobic002G169633 Sobic002G169633 Sobic001G072500--Sobic002G169633 Sobic003G401600 Sobic003G401600 Sobic001G072500--Sobic003G401600 Sobic004G263600 Sobic004G263600 Sobic001G072500--Sobic004G263600 Sobic001G072500--Sobic004G209600 Sobic002G316600 Sobic002G316600 Sobic001G072500--Sobic002G316600 Sobic001G072500--Sobic004G314000 Sobic001G072500--Sobic006G131500 Sobic010G206900 Sobic010G206900 Sobic001G072500--Sobic010G206900 Sobic001G072500--Sobic010G139000
Octagon: transcription factors


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