Gene annotation
Transcriptome id Sobic.001G058700.1
Synonym XRN4, ATXRN4, AIN1, Sb01g005340, EIN5
Functional annotation XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed
UniProt C5WX87
Pfam PF00098 PF03159
Panther DB PTHR12341 PTHR12341:SF30
NCBI CDD -
KEGG Orthology K12619; XRN2, 5'-3' exoribonuclease 2
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding GO:0004527exonuclease activity


Orthologs (automatic annotation)
TAIR AT1G54490 : exoribonuclease 4
RAP-DB (Rice) LOC_Os03g58060.1 : XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023976 , Zm00025a029985 , Zm00025a016583
Brachypodium PNT73282 , PNT73283 , KQK12727
Barley HORVU3Hr1G082310.9 , HORVU3Hr1G082310.8 , HORVU3Hr1G082310.3 , HORVU3Hr1G082310.2 , HORVU3Hr1G082310.1 , HORVU3Hr1G082310.7 , HORVU3Hr1G082310.6 , HORVU3Hr1G082310.5 , HORVU3Hr1G082310.4 , HORVU3Hr1G082310.19 , HORVU3Hr1G082310.18 , HORVU3Hr1G082310.13 , HORVU3Hr1G082310.12 , HORVU3Hr1G082310.11 , HORVU3Hr1G082310.10 , HORVU3Hr1G082310.17 , HORVU3Hr1G082310.16 , HORVU1Hr1G011980.1 , HORVU3Hr1G082310.27 , HORVU3Hr1G082310.22 , HORVU3Hr1G082310.23 , HORVU3Hr1G082310.20 , HORVU3Hr1G082310.21 , HORVU3Hr1G082310.26 , HORVU3Hr1G082310.24 , HORVU3Hr1G082310.25 , HORVU0Hr1G014290.1 , HORVU5Hr1G104860.9 , HORVU3Hr1G082310.15 , HORVU3Hr1G082310.14 , HORVU7Hr1G085250.3 , HORVU7Hr1G085250.2 , HORVU7Hr1G085250.1 , HORVU5Hr1G012500.1 , HORVU5Hr1G012500.3 , HORVU5Hr1G012500.2 , HORVU5Hr1G012500.5 , HORVU5Hr1G012500.4 , HORVU5Hr1G012500.7 , HORVU5Hr1G012500.6 , HORVU2Hr1G012300.1 , HORVU2Hr1G012300.2 , HORVU2Hr1G012300.3 , HORVU2Hr1G012300.4 , HORVU5Hr1G104860.10 , HORVU5Hr1G104860.11 , HORVU5Hr1G104860.12 , HORVU5Hr1G104860.13 , HORVU5Hr1G104860.14 , HORVU5Hr1G104860.15 , HORVU5Hr1G104860.16 , HORVU5Hr1G104860.17 , HORVU5Hr1G104860.8 , HORVU5Hr1G104860.2 , HORVU5Hr1G104860.3 , HORVU5Hr1G104860.1 , HORVU5Hr1G104860.6 , HORVU5Hr1G104860.7 , HORVU5Hr1G104860.4 , HORVU5Hr1G104860.5
Wheat TraesCS3D02G376100 , TraesCS3D02G376100 , TraesCS3D02G376100 , TraesCS3D02G376100 , TraesCS5D02G442200 , TraesCS5A02G434400 , TraesCS5A02G434400 , TraesCS2D02G072800 , TraesCS5B02G437400 , TraesCS2A02G073800 , TraesCS3A02G383100 , TraesCS3A02G383100 , TraesCS3A02G383100 , TraesCS2B02G088500
Populus PNT07166 , PNT07167 , PNT07165


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cDNA sequences
Sobic.001G058700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
2 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
3 Sobic.001G050600 expressed protein -
4 Sobic.007G062800 SET domain containing protein, expressed -
5 Sobic.001G540400 expressed protein -
6 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
7 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
8 Sobic.005G028600 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.001G219900 expressed protein -
10 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
11 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
12 Sobic.003G422500 expressed protein -
13 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
14 Sobic.001G146800 expressed protein -
15 Sobic.002G397500 SAC3/GANP family protein, expressed -
16 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
17 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
18 Sobic.003G093800 - K03254: translation initiation factor 3 subunit A
19 Sobic.001G289800 BAH domain containing protein, putative, expressed -
20 Sobic.006G040500 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase


Gene co-expression network
sample Sobic001G058700 Sobic001G058700 Sobic003G408600 Sobic003G408600 Sobic001G058700--Sobic003G408600 Sobic007G172400 Sobic007G172400 Sobic001G058700--Sobic007G172400 Sobic001G050600 Sobic001G050600 Sobic001G058700--Sobic001G050600 Sobic007G062800 Sobic007G062800 Sobic001G058700--Sobic007G062800 Sobic001G540400 Sobic001G540400 Sobic001G058700--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic001G058700--Sobic005G008800 Sobic004G347400 Sobic004G347400 Sobic001G058700--Sobic004G347400 Sobic005G028600 Sobic005G028600 Sobic001G058700--Sobic005G028600 Sobic001G219900 Sobic001G219900 Sobic001G058700--Sobic001G219900 Sobic003G408600--Sobic001G540400 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic003G408600--Sobic005G112300 Sobic007G163100 Sobic007G163100 Sobic003G408600--Sobic007G163100 Sobic010G112100 Sobic010G112100 Sobic003G408600--Sobic010G112100 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic002G045600 Sobic002G045600 Sobic003G408600--Sobic002G045600 Sobic007G172400--Sobic001G058700 Sobic007G172400--Sobic002G071500 Sobic007G172400--Sobic001G050600 Sobic007G172400--Sobic004G347400 Sobic002G419800 Sobic002G419800 Sobic007G172400--Sobic002G419800 Sobic007G172400--Sobic001G219900 Sobic004G113400 Sobic004G113400 Sobic007G172400--Sobic004G113400 Sobic001G474600 Sobic001G474600 Sobic007G172400--Sobic001G474600 Sobic007G172400--Sobic003G408600 Sobic007G098500 Sobic007G098500 Sobic001G050600--Sobic007G098500 Sobic001G037100 Sobic001G037100 Sobic001G050600--Sobic001G037100 Sobic001G050600--Sobic001G058700 Sobic001G050600--Sobic001G219900 Sobic001G050600--Sobic007G172400 Sobic001G137000 Sobic001G137000 Sobic001G050600--Sobic001G137000 Sobic001G280900 Sobic001G280900 Sobic001G050600--Sobic001G280900 Sobic008G092600 Sobic008G092600 Sobic001G050600--Sobic008G092600 Sobic003G259100 Sobic003G259100 Sobic001G050600--Sobic003G259100 Sobic007G062800--Sobic001G540400 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic002G008900 Sobic002G008900 Sobic007G062800--Sobic002G008900 Sobic010G010700 Sobic010G010700 Sobic007G062800--Sobic010G010700 Sobic004G242400 Sobic004G242400 Sobic007G062800--Sobic004G242400 Sobic004G034900 Sobic004G034900 Sobic007G062800--Sobic004G034900 Sobic004G276400 Sobic004G276400 Sobic007G062800--Sobic004G276400 Sobic007G062800--Sobic002G397500 Sobic001G289600 Sobic001G289600 Sobic001G540400--Sobic001G289600 Sobic001G540400--Sobic003G408600 Sobic001G540400--Sobic007G062800 Sobic001G540400--Sobic005G008800 Sobic001G540400--Sobic004G034900 Sobic001G540400--Sobic005G112300 Sobic003G422500 Sobic003G422500 Sobic001G540400--Sobic003G422500 Sobic001G540400--Sobic002G397500 Sobic001G540400--Sobic010G112100 Sobic005G008800--Sobic001G540400 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic005G008800--Sobic007G062800 Sobic005G008800--Sobic001G289600 Sobic004G314000 Sobic004G314000 Sobic005G008800--Sobic004G314000 Sobic008G009700 Sobic008G009700 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic009G109200 Sobic009G109200 Sobic005G008800--Sobic009G109200 Sobic004G347400--Sobic003G422500 Sobic004G347400--Sobic001G058700 Sobic003G118200 Sobic003G118200 Sobic004G347400--Sobic003G118200 Sobic001G114000 Sobic001G114000 Sobic004G347400--Sobic001G114000 Sobic004G347400--Sobic007G172400 Sobic004G331100 Sobic004G331100 Sobic004G347400--Sobic004G331100 Sobic009G053900 Sobic009G053900 Sobic004G347400--Sobic009G053900 Sobic001G065000 Sobic001G065000 Sobic004G347400--Sobic001G065000 Sobic004G347400--Sobic001G474600 Sobic005G028600--Sobic001G058700 Sobic003G247300 Sobic003G247300 Sobic005G028600--Sobic003G247300 Sobic005G028600--Sobic002G397500 Sobic001G299700 Sobic001G299700 Sobic005G028600--Sobic001G299700 Sobic005G028600--Sobic003G408600 Sobic005G001000 Sobic005G001000 Sobic005G028600--Sobic005G001000 Sobic005G028600--Sobic001G280900 Sobic005G028600--Sobic007G062800 Sobic005G028600--Sobic005G008800 Sobic001G219900--Sobic003G408600 Sobic001G219900--Sobic002G071500 Sobic004G223600 Sobic004G223600 Sobic001G219900--Sobic004G223600 Sobic001G219900--Sobic001G058700 Sobic001G219900--Sobic002G397500 Sobic001G219900--Sobic001G050600 Sobic010G001100 Sobic010G001100 Sobic001G219900--Sobic010G001100 Sobic009G119000 Sobic009G119000 Sobic001G219900--Sobic009G119000 Sobic001G219900--Sobic008G009700
Octagon: transcription factors


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