Gene annotation
Transcriptome id Sobic.003G093800.1
Synonym TIF3A1, EIF3A-1, EIF3A, ATTIF3A1, ATEIF3A-1, Sb03g007840
Functional annotation -
UniProt C5XE74
Pfam PF01399
Panther DB PTHR14005
NCBI CDD -
KEGG Orthology K03254; translation initiation factor 3 subunit A
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G11420 : eukaryotic translation initiation factor 3A
RAP-DB (Rice) LOC_Os01g03070.2 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a035780 , Zm00025a023066
Brachypodium KQK02456
Barley HORVU7Hr1G016130.7 , HORVU7Hr1G016130.4 , HORVU7Hr1G016130.5 , HORVU7Hr1G016130.3 , HORVU7Hr1G016130.1 , HORVU7Hr1G016130.8 , HORVU7Hr1G016130.9 , HORVU3Hr1G006000.7 , HORVU3Hr1G006000.6 , HORVU3Hr1G006000.5 , HORVU3Hr1G006000.4 , HORVU3Hr1G006000.3 , HORVU3Hr1G006000.1 , HORVU3Hr1G006000.9 , HORVU7Hr1G016130.11 , HORVU7Hr1G016130.13 , HORVU3Hr1G006000.8 , HORVU3Hr1G006000.12 , HORVU3Hr1G006000.11 , HORVU3Hr1G006000.10
Wheat TraesCS7A02G074200 , TraesCS3D02G020200 , TraesCS3D02G020200 , TraesCS3B02G019500 , TraesCS3A02G025500 , TraesCS3A02G025500 , TraesCS7D02G069200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G116600 FHA domain containing protein, putative, expressed -
2 Sobic.001G065000 expressed protein -
3 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
4 Sobic.001G536400 THO complex subunit 1, putative, expressed K12878: THO complex subunit 1
5 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
6 Sobic.002G299700 ATGRIP/GRIP, putative, expressed -
7 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
8 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
9 Sobic.009G249700 expressed protein -
10 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
11 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
12 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
13 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
14 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
15 Sobic.007G062800 SET domain containing protein, expressed -
16 Sobic.006G252900 ubiquitin family protein, putative, expressed -
17 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
18 Sobic.001G289800 BAH domain containing protein, putative, expressed -
19 Sobic.002G042600 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
20 Sobic.010G166400 initiator tRNA phosphoribosyl transferase family protein, putative, expressed K15463: tRNA A64-2'-O-ribosylphosphate transferase


Gene co-expression network
sample Sobic003G093800 Sobic003G093800 Sobic010G116600 Sobic010G116600 Sobic003G093800--Sobic010G116600 Sobic001G065000 Sobic001G065000 Sobic003G093800--Sobic001G065000 Sobic003G408600 Sobic003G408600 Sobic003G093800--Sobic003G408600 Sobic001G536400 Sobic001G536400 Sobic003G093800--Sobic001G536400 Sobic001G058700 Sobic001G058700 Sobic003G093800--Sobic001G058700 Sobic002G299700 Sobic002G299700 Sobic003G093800--Sobic002G299700 Sobic009G044800 Sobic009G044800 Sobic003G093800--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic003G093800--Sobic002G071500 Sobic009G249700 Sobic009G249700 Sobic003G093800--Sobic009G249700 Sobic010G116600--Sobic002G071500 Sobic010G116600--Sobic002G299700 Sobic010G116600--Sobic003G093800 Sobic010G116600--Sobic009G044800 Sobic004G072100 Sobic004G072100 Sobic010G116600--Sobic004G072100 Sobic010G236400 Sobic010G236400 Sobic010G116600--Sobic010G236400 Sobic010G275500 Sobic010G275500 Sobic010G116600--Sobic010G275500 Sobic010G116600--Sobic003G408600 Sobic010G053800 Sobic010G053800 Sobic010G116600--Sobic010G053800 Sobic001G114000 Sobic001G114000 Sobic001G065000--Sobic001G114000 Sobic001G281100 Sobic001G281100 Sobic001G065000--Sobic001G281100 Sobic006G012500 Sobic006G012500 Sobic001G065000--Sobic006G012500 Sobic001G534800 Sobic001G534800 Sobic001G065000--Sobic001G534800 Sobic005G118600 Sobic005G118600 Sobic001G065000--Sobic005G118600 Sobic008G099800 Sobic008G099800 Sobic001G065000--Sobic008G099800 Sobic001G065000--Sobic003G093800 Sobic006G037700 Sobic006G037700 Sobic001G065000--Sobic006G037700 Sobic003G229500 Sobic003G229500 Sobic001G065000--Sobic003G229500 Sobic001G540400 Sobic001G540400 Sobic003G408600--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic003G408600--Sobic005G112300 Sobic007G163100 Sobic007G163100 Sobic003G408600--Sobic007G163100 Sobic010G112100 Sobic010G112100 Sobic003G408600--Sobic010G112100 Sobic003G408600--Sobic001G058700 Sobic003G408600--Sobic002G071500 Sobic002G045600 Sobic002G045600 Sobic003G408600--Sobic002G045600 Sobic001G536400--Sobic003G093800 Sobic009G165700 Sobic009G165700 Sobic001G536400--Sobic009G165700 Sobic001G441400 Sobic001G441400 Sobic001G536400--Sobic001G441400 Sobic001G451400 Sobic001G451400 Sobic001G536400--Sobic001G451400 Sobic006G252900 Sobic006G252900 Sobic001G536400--Sobic006G252900 Sobic001G363500 Sobic001G363500 Sobic001G536400--Sobic001G363500 Sobic003G422500 Sobic003G422500 Sobic001G536400--Sobic003G422500 Sobic004G065100 Sobic004G065100 Sobic001G536400--Sobic004G065100 Sobic001G289800 Sobic001G289800 Sobic001G536400--Sobic001G289800 Sobic001G058700--Sobic003G408600 Sobic007G172400 Sobic007G172400 Sobic001G058700--Sobic007G172400 Sobic001G050600 Sobic001G050600 Sobic001G058700--Sobic001G050600 Sobic007G062800 Sobic007G062800 Sobic001G058700--Sobic007G062800 Sobic001G058700--Sobic001G540400 Sobic001G058700--Sobic005G008800 Sobic004G347400 Sobic004G347400 Sobic001G058700--Sobic004G347400 Sobic005G028600 Sobic005G028600 Sobic001G058700--Sobic005G028600 Sobic001G219900 Sobic001G219900 Sobic001G058700--Sobic001G219900 Sobic002G299700--Sobic010G116600 Sobic002G299700--Sobic001G363500 Sobic002G299700--Sobic005G112300 Sobic002G299700--Sobic002G397500 Sobic004G048800 Sobic004G048800 Sobic002G299700--Sobic004G048800 Sobic004G242400 Sobic004G242400 Sobic002G299700--Sobic004G242400 Sobic007G105100 Sobic007G105100 Sobic002G299700--Sobic007G105100 Sobic002G299700--Sobic003G408600 Sobic002G299700--Sobic007G062800 Sobic003G360400 Sobic003G360400 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic009G044800--Sobic002G045600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic001G433800 Sobic001G433800 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic002G071500--Sobic005G112300 Sobic002G071500--Sobic003G408600 Sobic008G009700 Sobic008G009700 Sobic002G071500--Sobic008G009700 Sobic002G071500--Sobic010G116600 Sobic001G026200 Sobic001G026200 Sobic002G071500--Sobic001G026200 Sobic002G153700 Sobic002G153700 Sobic002G071500--Sobic002G153700 Sobic010G069100 Sobic010G069100 Sobic002G071500--Sobic010G069100 Sobic003G119000 Sobic003G119000 Sobic002G071500--Sobic003G119000 Sobic010G201500 Sobic010G201500 Sobic002G071500--Sobic010G201500 Sobic009G249700--Sobic007G218000 Sobic009G249700--Sobic003G093800 Sobic003G189600 Sobic003G189600 Sobic009G249700--Sobic003G189600 Sobic003G394200 Sobic003G394200 Sobic009G249700--Sobic003G394200 Sobic005G034700 Sobic005G034700 Sobic009G249700--Sobic005G034700 Sobic004G345400 Sobic004G345400 Sobic009G249700--Sobic004G345400 Sobic010G169900 Sobic010G169900 Sobic009G249700--Sobic010G169900 Sobic003G444800 Sobic003G444800 Sobic009G249700--Sobic003G444800 Sobic007G042900 Sobic007G042900 Sobic009G249700--Sobic007G042900
Octagon: transcription factors


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