Gene annotation
Transcriptome id Sobic.001G536400.1,Sobic.001G536400.3,Sobic.001G536400.2
Synonym AtHPR1, HPR1, AtTHO1, THO1, Sb01g049910
Functional annotation THO complex subunit 1, putative, expressed
UniProt A0A1Z5SC08 , A0A1Z5SBX6 , C5WMN6
Pfam PF11957
Panther DB PTHR13265 PTHR13265 PTHR13265:SF0
NCBI CDD KOG2491; Nuclear matrix protein
KEGG Orthology K12878; THO complex subunit 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G09860 : nuclear matrix protein-related
RAP-DB (Rice) LOC_Os03g01970.1 : THO complex subunit 1, putative, expressed
MaizeGDB (Corn) Zm00025a000170
Brachypodium KQK24056
Barley HORVU4Hr1G089820.3 , HORVU4Hr1G089820.2 , HORVU4Hr1G089820.1 , HORVU4Hr1G089820.7 , HORVU4Hr1G089820.6 , HORVU4Hr1G089820.9 , HORVU4Hr1G089820.8
Wheat TraesCS5A02G552700 , TraesCS5B02G284700 , TraesCS4B02G387800 , TraesCS4B02G387800 , TraesCSU02G124900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G093800 - K03254: translation initiation factor 3 subunit A
2 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
3 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
4 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
5 Sobic.006G252900 ubiquitin family protein, putative, expressed -
6 Sobic.001G363500 DIRP family protein, putative, expressed -
7 Sobic.003G422500 expressed protein -
8 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
9 Sobic.001G289800 BAH domain containing protein, putative, expressed -
10 Sobic.002G429300 importin subunit beta, putative, expressed -
11 Sobic.002G299700 ATGRIP/GRIP, putative, expressed -
12 Sobic.010G116600 FHA domain containing protein, putative, expressed -
13 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
14 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
15 Sobic.008G087866 - -
16 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
17 Sobic.008G132600 expressed protein -
18 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
19 Sobic.007G062800 SET domain containing protein, expressed -
20 Sobic.003G101400 transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a


Gene co-expression network
sample Sobic001G536400 Sobic001G536400 Sobic003G093800 Sobic003G093800 Sobic001G536400--Sobic003G093800 Sobic009G165700 Sobic009G165700 Sobic001G536400--Sobic009G165700 Sobic001G441400 Sobic001G441400 Sobic001G536400--Sobic001G441400 Sobic001G451400 Sobic001G451400 Sobic001G536400--Sobic001G451400 Sobic006G252900 Sobic006G252900 Sobic001G536400--Sobic006G252900 Sobic001G363500 Sobic001G363500 Sobic001G536400--Sobic001G363500 Sobic003G422500 Sobic003G422500 Sobic001G536400--Sobic003G422500 Sobic004G065100 Sobic004G065100 Sobic001G536400--Sobic004G065100 Sobic001G289800 Sobic001G289800 Sobic001G536400--Sobic001G289800 Sobic010G116600 Sobic010G116600 Sobic003G093800--Sobic010G116600 Sobic001G065000 Sobic001G065000 Sobic003G093800--Sobic001G065000 Sobic003G408600 Sobic003G408600 Sobic003G093800--Sobic003G408600 Sobic003G093800--Sobic001G536400 Sobic001G058700 Sobic001G058700 Sobic003G093800--Sobic001G058700 Sobic002G299700 Sobic002G299700 Sobic003G093800--Sobic002G299700 Sobic009G044800 Sobic009G044800 Sobic003G093800--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic003G093800--Sobic002G071500 Sobic009G249700 Sobic009G249700 Sobic003G093800--Sobic009G249700 Sobic009G165700--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic009G165700--Sobic010G247800 Sobic010G206900 Sobic010G206900 Sobic009G165700--Sobic010G206900 Sobic003G166750 Sobic003G166750 Sobic009G165700--Sobic003G166750 Sobic008G087866 Sobic008G087866 Sobic009G165700--Sobic008G087866 Sobic009G165700--Sobic001G451400 Sobic003G170900 Sobic003G170900 Sobic009G165700--Sobic003G170900 Sobic001G534700 Sobic001G534700 Sobic009G165700--Sobic001G534700 Sobic008G001200 Sobic008G001200 Sobic009G165700--Sobic008G001200 Sobic001G441400--Sobic001G451400 Sobic003G404500 Sobic003G404500 Sobic001G441400--Sobic003G404500 Sobic001G441400--Sobic006G252900 Sobic005G027400 Sobic005G027400 Sobic001G441400--Sobic005G027400 Sobic001G441400--Sobic009G165700 Sobic001G441400--Sobic001G363500 Sobic003G102400 Sobic003G102400 Sobic001G441400--Sobic003G102400 Sobic001G441400--Sobic002G299700 Sobic004G351100 Sobic004G351100 Sobic001G441400--Sobic004G351100 Sobic007G008900 Sobic007G008900 Sobic001G451400--Sobic007G008900 Sobic001G451400--Sobic009G165700 Sobic001G451400--Sobic001G441400 Sobic001G389100 Sobic001G389100 Sobic001G451400--Sobic001G389100 Sobic001G451400--Sobic010G247800 Sobic001G451400--Sobic003G404500 Sobic010G226000 Sobic010G226000 Sobic001G451400--Sobic010G226000 Sobic001G451400--Sobic005G027400 Sobic001G451400--Sobic003G422500 Sobic001G433800 Sobic001G433800 Sobic006G252900--Sobic001G433800 Sobic006G041600 Sobic006G041600 Sobic006G252900--Sobic006G041600 Sobic006G252900--Sobic001G363500 Sobic006G252900--Sobic001G441400 Sobic009G256400 Sobic009G256400 Sobic006G252900--Sobic009G256400 Sobic006G096900 Sobic006G096900 Sobic006G252900--Sobic006G096900 Sobic005G112300 Sobic005G112300 Sobic006G252900--Sobic005G112300 Sobic006G252900--Sobic005G027400 Sobic009G177500 Sobic009G177500 Sobic006G252900--Sobic009G177500 Sobic001G363500--Sobic005G112300 Sobic007G062800 Sobic007G062800 Sobic001G363500--Sobic007G062800 Sobic001G363500--Sobic010G247800 Sobic001G363500--Sobic002G299700 Sobic010G112100 Sobic010G112100 Sobic001G363500--Sobic010G112100 Sobic004G242400 Sobic004G242400 Sobic001G363500--Sobic004G242400 Sobic001G363500--Sobic001G433800 Sobic010G279450 Sobic010G279450 Sobic001G363500--Sobic010G279450 Sobic010G139000 Sobic010G139000 Sobic001G363500--Sobic010G139000 Sobic002G411600 Sobic002G411600 Sobic003G422500--Sobic002G411600 Sobic009G191000 Sobic009G191000 Sobic003G422500--Sobic009G191000 Sobic001G289600 Sobic001G289600 Sobic003G422500--Sobic001G289600 Sobic003G422500--Sobic009G165700 Sobic002G008900 Sobic002G008900 Sobic003G422500--Sobic002G008900 Sobic004G034900 Sobic004G034900 Sobic003G422500--Sobic004G034900 Sobic003G422500--Sobic001G289800 Sobic001G540400 Sobic001G540400 Sobic003G422500--Sobic001G540400 Sobic008G132600 Sobic008G132600 Sobic003G422500--Sobic008G132600 Sobic001G241200 Sobic001G241200 Sobic004G065100--Sobic001G241200 Sobic002G309600 Sobic002G309600 Sobic004G065100--Sobic002G309600 Sobic007G117400 Sobic007G117400 Sobic004G065100--Sobic007G117400 Sobic003G119000 Sobic003G119000 Sobic004G065100--Sobic003G119000 Sobic004G065100--Sobic005G027400 Sobic001G154900 Sobic001G154900 Sobic004G065100--Sobic001G154900 Sobic005G008800 Sobic005G008800 Sobic004G065100--Sobic005G008800 Sobic005G104500 Sobic005G104500 Sobic004G065100--Sobic005G104500 Sobic004G065100--Sobic005G112300 Sobic001G289800--Sobic001G289600 Sobic001G289800--Sobic003G422500 Sobic001G194200 Sobic001G194200 Sobic001G289800--Sobic001G194200 Sobic004G291900 Sobic004G291900 Sobic001G289800--Sobic004G291900 Sobic001G289800--Sobic004G034900 Sobic001G002000 Sobic001G002000 Sobic001G289800--Sobic001G002000 Sobic010G010700 Sobic010G010700 Sobic001G289800--Sobic010G010700 Sobic001G289800--Sobic007G062800 Sobic005G001000 Sobic005G001000 Sobic001G289800--Sobic005G001000
Octagon: transcription factors


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