Gene annotation
Transcriptome id Sobic.006G252900.1,Sobic.006G252900.2
Synonym Sb06g031753
Functional annotation ubiquitin family protein, putative, expressed
UniProt A0A1B6PNU9
Pfam PF00240
Panther DB PTHR15204
NCBI CDD KOG0005; Ubiquitin-like protein KOG0001Ubiquitin and ubiquitin-like proteins KOG0011Nucleotide excision repair factor NEF2, RAD23 component
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G25270 : Ubiquitin-like superfamily protein
RAP-DB (Rice) LOC_Os08g19830.1 : ubiquitin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a009426
Brachypodium -
Barley HORVU3Hr1G014250.27 , HORVU3Hr1G014250.20 , HORVU3Hr1G014250.21 , HORVU3Hr1G014250.22 , HORVU3Hr1G014250.24 , HORVU3Hr1G014250.25 , HORVU3Hr1G014250.26 , HORVU3Hr1G014250.23 , HORVU3Hr1G014250.11 , HORVU3Hr1G014250.10 , HORVU3Hr1G014250.16 , HORVU3Hr1G014250.19 , HORVU3Hr1G014250.18 , HORVU3Hr1G014250.13 , HORVU3Hr1G014250.12 , HORVU3Hr1G014250.15 , HORVU3Hr1G014250.14 , HORVU3Hr1G014250.17 , HORVU3Hr1G014250.5 , HORVU3Hr1G014250.4 , HORVU3Hr1G014250.7 , HORVU3Hr1G014250.6 , HORVU3Hr1G014250.1 , HORVU3Hr1G014250.3 , HORVU3Hr1G014250.2 , HORVU3Hr1G014250.9 , HORVU3Hr1G014250.8
Wheat TraesCS3D02G079600 , TraesCS3D02G079600 , TraesCS3D02G079600 , TraesCS3D02G079600 , TraesCS3D02G079600 , TraesCS3B02G094400 , TraesCS3B02G094400 , TraesCS3B02G094400 , TraesCS3B02G094400 , TraesCS3B02G094400 , TraesCS3A02G079200 , TraesCS3A02G079200 , TraesCS3A02G079200 , TraesCS3A02G079200 , TraesCS3A02G079200 , TraesCS3A02G079200 , TraesCS3A02G079200 , TraesCS3B02G094400
Populus -


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cDNA sequences
Sobic.006G252900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
2 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
3 Sobic.001G363500 DIRP family protein, putative, expressed -
4 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
5 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
6 Sobic.006G096900 expressed protein -
7 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
8 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
9 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
10 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
11 Sobic.002G325300 acyltransferase, putative, expressed K13506: GPAT3_4, AGPAT9, glycerol-3-phosphate O-acyltransferase 3/4
12 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
13 Sobic.001G289800 BAH domain containing protein, putative, expressed -
14 Sobic.001G374100 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
15 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
16 Sobic.010G010700 PHD-finger family protein, expressed -
17 Sobic.003G404500 dynamin family protein, putative, expressed K17065: dynamin 1-like protein
18 Sobic.001G002000 protein kinase domain containing protein, expressed -
19 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
20 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1


Gene co-expression network
sample Sobic006G252900 Sobic006G252900 Sobic001G433800 Sobic001G433800 Sobic006G252900--Sobic001G433800 Sobic006G041600 Sobic006G041600 Sobic006G252900--Sobic006G041600 Sobic001G363500 Sobic001G363500 Sobic006G252900--Sobic001G363500 Sobic001G441400 Sobic001G441400 Sobic006G252900--Sobic001G441400 Sobic009G256400 Sobic009G256400 Sobic006G252900--Sobic009G256400 Sobic006G096900 Sobic006G096900 Sobic006G252900--Sobic006G096900 Sobic005G112300 Sobic005G112300 Sobic006G252900--Sobic005G112300 Sobic005G027400 Sobic005G027400 Sobic006G252900--Sobic005G027400 Sobic009G177500 Sobic009G177500 Sobic006G252900--Sobic009G177500 Sobic010G112100 Sobic010G112100 Sobic001G433800--Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic001G433800--Sobic003G360400 Sobic007G063000 Sobic007G063000 Sobic001G433800--Sobic007G063000 Sobic001G433800--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic001G433800--Sobic004G242400 Sobic002G133300 Sobic002G133300 Sobic001G433800--Sobic002G133300 Sobic001G433800--Sobic001G363500 Sobic001G433800--Sobic006G252900 Sobic001G433800--Sobic006G041600 Sobic001G194200 Sobic001G194200 Sobic006G041600--Sobic001G194200 Sobic006G041600--Sobic001G433800 Sobic004G291900 Sobic004G291900 Sobic006G041600--Sobic004G291900 Sobic006G041600--Sobic006G252900 Sobic001G002000 Sobic001G002000 Sobic006G041600--Sobic001G002000 Sobic001G289800 Sobic001G289800 Sobic006G041600--Sobic001G289800 Sobic006G041600--Sobic002G133300 Sobic004G185800 Sobic004G185800 Sobic006G041600--Sobic004G185800 Sobic001G207000 Sobic001G207000 Sobic006G041600--Sobic001G207000 Sobic001G363500--Sobic005G112300 Sobic007G062800 Sobic007G062800 Sobic001G363500--Sobic007G062800 Sobic010G247800 Sobic010G247800 Sobic001G363500--Sobic010G247800 Sobic002G299700 Sobic002G299700 Sobic001G363500--Sobic002G299700 Sobic001G363500--Sobic010G112100 Sobic001G363500--Sobic004G242400 Sobic001G363500--Sobic001G433800 Sobic010G279450 Sobic010G279450 Sobic001G363500--Sobic010G279450 Sobic010G139000 Sobic010G139000 Sobic001G363500--Sobic010G139000 Sobic001G451400 Sobic001G451400 Sobic001G441400--Sobic001G451400 Sobic003G404500 Sobic003G404500 Sobic001G441400--Sobic003G404500 Sobic001G441400--Sobic006G252900 Sobic001G441400--Sobic005G027400 Sobic009G165700 Sobic009G165700 Sobic001G441400--Sobic009G165700 Sobic001G441400--Sobic001G363500 Sobic003G102400 Sobic003G102400 Sobic001G441400--Sobic003G102400 Sobic001G441400--Sobic002G299700 Sobic004G351100 Sobic004G351100 Sobic001G441400--Sobic004G351100 Sobic001G457800 Sobic001G457800 Sobic009G256400--Sobic001G457800 Sobic008G001200 Sobic008G001200 Sobic009G256400--Sobic008G001200 Sobic001G370900 Sobic001G370900 Sobic009G256400--Sobic001G370900 Sobic009G256400--Sobic004G291900 Sobic005G001000 Sobic005G001000 Sobic009G256400--Sobic005G001000 Sobic003G166750 Sobic003G166750 Sobic009G256400--Sobic003G166750 Sobic009G256400--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic009G256400--Sobic004G276400 Sobic010G010700 Sobic010G010700 Sobic009G256400--Sobic010G010700 Sobic008G063300 Sobic008G063300 Sobic006G096900--Sobic008G063300 Sobic006G096900--Sobic009G177500 Sobic006G096900--Sobic006G252900 Sobic006G096900--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic006G096900--Sobic003G095900 Sobic006G056700 Sobic006G056700 Sobic006G096900--Sobic006G056700 Sobic006G096900--Sobic001G433800 Sobic001G384300 Sobic001G384300 Sobic006G096900--Sobic001G384300 Sobic009G044800 Sobic009G044800 Sobic006G096900--Sobic009G044800 Sobic005G112300--Sobic001G363500 Sobic005G112300--Sobic007G062800 Sobic005G112300--Sobic010G112100 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic001G540400 Sobic001G540400 Sobic005G112300--Sobic001G540400 Sobic005G112300--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic002G309600 Sobic002G309600 Sobic005G027400--Sobic002G309600 Sobic004G065100 Sobic004G065100 Sobic005G027400--Sobic004G065100 Sobic005G027400--Sobic001G451400 Sobic009G132700 Sobic009G132700 Sobic005G027400--Sobic009G132700 Sobic007G117400 Sobic007G117400 Sobic005G027400--Sobic007G117400 Sobic001G219600 Sobic001G219600 Sobic005G027400--Sobic001G219600 Sobic005G027400--Sobic001G289800 Sobic008G047800 Sobic008G047800 Sobic005G027400--Sobic008G047800 Sobic004G006900 Sobic004G006900 Sobic005G027400--Sobic004G006900 Sobic009G177500--Sobic001G433800 Sobic001G227200 Sobic001G227200 Sobic009G177500--Sobic001G227200 Sobic009G177500--Sobic005G112300 Sobic004G140600 Sobic004G140600 Sobic009G177500--Sobic004G140600 Sobic009G177500--Sobic008G047800 Sobic009G177500--Sobic010G112100 Sobic007G090430 Sobic007G090430 Sobic009G177500--Sobic007G090430 Sobic001G392300 Sobic001G392300 Sobic009G177500--Sobic001G392300 Sobic002G343901 Sobic002G343901 Sobic009G177500--Sobic002G343901
Octagon: transcription factors


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