Gene annotation
Transcriptome id Sobic.001G374100.1
Synonym Sb01g035540
Functional annotation jmjC domain containing protein, expressed
UniProt C5X0L5
Pfam PF10497 PF02373 PF08879
Panther DB PTHR12549 PTHR12549:SF17
NCBI CDD KOG1356; Putative transcription factor 5qNCA, contains JmjC domain
KEGG Orthology K15601; [histone H3]-dimethyl-L-lysine9 demethylase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09060 : Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase
RAP-DB (Rice) LOC_Os03g22540.1 : jmjC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a046229 , Zm00025a052389
Brachypodium KQK21721
Barley HORVU4Hr1G047030.21 , HORVU4Hr1G047030.20 , HORVU4Hr1G047030.8 , HORVU4Hr1G047030.9 , HORVU4Hr1G047030.2 , HORVU4Hr1G047030.3 , HORVU4Hr1G047030.1 , HORVU4Hr1G047030.6 , HORVU4Hr1G047030.5 , HORVU4Hr1G047030.7 , HORVU4Hr1G047030.4 , HORVU4Hr1G047030.18 , HORVU4Hr1G047030.19 , HORVU4Hr1G047030.10 , HORVU4Hr1G047030.11 , HORVU4Hr1G047030.12 , HORVU4Hr1G047030.13 , HORVU4Hr1G047030.14 , HORVU4Hr1G047030.15 , HORVU4Hr1G047030.16 , HORVU4Hr1G047030.17
Wheat TraesCS4A02G139300 , TraesCS4D02G165700 , TraesCS4D02G165700 , TraesCS4D02G165700 , TraesCS4D02G165700 , TraesCS4D02G165700 , TraesCS4A02G139300 , TraesCS4A02G139300 , TraesCS4A02G139300 , TraesCS4A02G139300 , TraesCS4A02G139300 , TraesCS4A02G139300 , TraesCS4A02G139300 , TraesCS4A02G139300 , TraesCS4A02G139300 , TraesCS4B02G154300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G044100 expressed protein -
2 Sobic.004G134200 GTP binding protein, putative, expressed -
3 Sobic.010G010700 PHD-finger family protein, expressed -
4 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
5 Sobic.006G252900 ubiquitin family protein, putative, expressed -
6 Sobic.003G011300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
7 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
8 Sobic.006G259800 inducer of CBF expression 2, putative, expressed -
9 Sobic.001G456900 expressed protein -
10 Sobic.003G168100 BZIP protein, putative, expressed -
11 Sobic.001G530900 expressed protein -
12 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
13 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
14 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
15 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
16 Sobic.007G116200 expressed protein K13217: PRPF39, pre-mRNA-processing factor 39
17 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
18 Sobic.002G029900 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
20 Sobic.002G344000 expressed protein -


Gene co-expression network
sample Sobic001G374100 Sobic001G374100 Sobic008G044100 Sobic008G044100 Sobic001G374100--Sobic008G044100 Sobic004G134200 Sobic004G134200 Sobic001G374100--Sobic004G134200 Sobic010G010700 Sobic010G010700 Sobic001G374100--Sobic010G010700 Sobic003G155100 Sobic003G155100 Sobic001G374100--Sobic003G155100 Sobic006G252900 Sobic006G252900 Sobic001G374100--Sobic006G252900 Sobic003G011300 Sobic003G011300 Sobic001G374100--Sobic003G011300 Sobic008G001200 Sobic008G001200 Sobic001G374100--Sobic008G001200 Sobic006G259800 Sobic006G259800 Sobic001G374100--Sobic006G259800 Sobic001G456900 Sobic001G456900 Sobic001G374100--Sobic001G456900 Sobic008G044100--Sobic010G010700 Sobic008G044100--Sobic004G134200 Sobic008G044100--Sobic001G374100 Sobic008G044100--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G044100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic008G044100--Sobic001G230000 Sobic008G044100--Sobic008G001200 Sobic003G389200 Sobic003G389200 Sobic008G044100--Sobic003G389200 Sobic002G316600 Sobic002G316600 Sobic008G044100--Sobic002G316600 Sobic004G134200--Sobic008G044100 Sobic004G134200--Sobic001G374100 Sobic009G256300 Sobic009G256300 Sobic004G134200--Sobic009G256300 Sobic004G134200--Sobic010G010700 Sobic009G215500 Sobic009G215500 Sobic004G134200--Sobic009G215500 Sobic001G194200 Sobic001G194200 Sobic004G134200--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic004G134200--Sobic004G276400 Sobic004G134200--Sobic003G011300 Sobic001G172700 Sobic001G172700 Sobic004G134200--Sobic001G172700 Sobic010G010700--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic010G010700--Sobic007G062800 Sobic002G008900 Sobic002G008900 Sobic010G010700--Sobic002G008900 Sobic005G112300 Sobic005G112300 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic003G186000 Sobic003G186000 Sobic010G010700--Sobic003G186000 Sobic003G155100--Sobic008G001200 Sobic006G219600 Sobic006G219600 Sobic003G155100--Sobic006G219600 Sobic003G155100--Sobic010G206900 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic003G155100--Sobic001G194200 Sobic003G155100--Sobic010G010700 Sobic009G256400 Sobic009G256400 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic001G433800 Sobic001G433800 Sobic006G252900--Sobic001G433800 Sobic006G041600 Sobic006G041600 Sobic006G252900--Sobic006G041600 Sobic001G363500 Sobic001G363500 Sobic006G252900--Sobic001G363500 Sobic001G441400 Sobic001G441400 Sobic006G252900--Sobic001G441400 Sobic006G252900--Sobic009G256400 Sobic006G096900 Sobic006G096900 Sobic006G252900--Sobic006G096900 Sobic006G252900--Sobic005G112300 Sobic005G027400 Sobic005G027400 Sobic006G252900--Sobic005G027400 Sobic009G177500 Sobic009G177500 Sobic006G252900--Sobic009G177500 Sobic003G011300--Sobic004G134200 Sobic003G011300--Sobic001G374100 Sobic007G116200 Sobic007G116200 Sobic003G011300--Sobic007G116200 Sobic010G032900 Sobic010G032900 Sobic003G011300--Sobic010G032900 Sobic004G042200 Sobic004G042200 Sobic003G011300--Sobic004G042200 Sobic005G059800 Sobic005G059800 Sobic003G011300--Sobic005G059800 Sobic001G002000 Sobic001G002000 Sobic003G011300--Sobic001G002000 Sobic003G168100 Sobic003G168100 Sobic003G011300--Sobic003G168100 Sobic010G126000 Sobic010G126000 Sobic003G011300--Sobic010G126000 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic008G001200--Sobic009G256400 Sobic003G205200 Sobic003G205200 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic005G001000 Sobic005G001000 Sobic008G001200--Sobic005G001000 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic006G259800--Sobic001G374100 Sobic009G038900 Sobic009G038900 Sobic006G259800--Sobic009G038900 Sobic001G244700 Sobic001G244700 Sobic006G259800--Sobic001G244700 Sobic001G530900 Sobic001G530900 Sobic006G259800--Sobic001G530900 Sobic004G244900 Sobic004G244900 Sobic006G259800--Sobic004G244900 Sobic006G259800--Sobic004G042200 Sobic006G259800--Sobic008G044100 Sobic001G519900 Sobic001G519900 Sobic006G259800--Sobic001G519900 Sobic006G259800--Sobic003G155100 Sobic001G036050 Sobic001G036050 Sobic001G456900--Sobic001G036050 Sobic010G139000 Sobic010G139000 Sobic001G456900--Sobic010G139000 Sobic004G258700 Sobic004G258700 Sobic001G456900--Sobic004G258700 Sobic008G113100 Sobic008G113100 Sobic001G456900--Sobic008G113100 Sobic008G028700 Sobic008G028700 Sobic001G456900--Sobic008G028700 Sobic002G180666 Sobic002G180666 Sobic001G456900--Sobic002G180666 Sobic001G311500 Sobic001G311500 Sobic001G456900--Sobic001G311500 Sobic003G398700 Sobic003G398700 Sobic001G456900--Sobic003G398700 Sobic003G101500 Sobic003G101500 Sobic001G456900--Sobic003G101500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.