Gene annotation
Transcriptome id Sobic.003G011300.1,Sobic.003G011300.2
Synonym
Functional annotation expressed protein
UniProt A0A1B6Q0S4
Pfam -
Panther DB PTHR21551 PTHR21551:SF6
NCBI CDD -
KEGG Orthology K12617; PATL1, DNA topoisomerase 2-associated protein PAT1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G79090 : -
RAP-DB (Rice) LOC_Os02g19330.2 : expressed protein
MaizeGDB (Corn) Zm00025a019753 , Zm00025a035960
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G011300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G134200 GTP binding protein, putative, expressed -
2 Sobic.001G374100 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
3 Sobic.007G116200 expressed protein K13217: PRPF39, pre-mRNA-processing factor 39
4 Sobic.010G032900 transketolase, putative, expressed K01662: 1-deoxy-D-xylulose-5-phosphate synthase
5 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
6 Sobic.005G059800 RNA recognition motif containing protein, putative, expressed K14407: CSTF2, cleavage stimulation factor subunit 2
7 Sobic.001G002000 protein kinase domain containing protein, expressed -
8 Sobic.003G168100 BZIP protein, putative, expressed -
9 Sobic.010G126000 WD-40 repeat family protein, putative, expressed -
10 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
11 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
12 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
13 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
14 Sobic.006G252900 ubiquitin family protein, putative, expressed -
15 Sobic.010G010700 PHD-finger family protein, expressed -
16 Sobic.008G044100 expressed protein -
17 Sobic.003G247500 expressed protein -
18 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
19 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
20 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit


Gene co-expression network
sample Sobic003G011300 Sobic003G011300 Sobic004G134200 Sobic004G134200 Sobic003G011300--Sobic004G134200 Sobic001G374100 Sobic001G374100 Sobic003G011300--Sobic001G374100 Sobic007G116200 Sobic007G116200 Sobic003G011300--Sobic007G116200 Sobic010G032900 Sobic010G032900 Sobic003G011300--Sobic010G032900 Sobic004G042200 Sobic004G042200 Sobic003G011300--Sobic004G042200 Sobic005G059800 Sobic005G059800 Sobic003G011300--Sobic005G059800 Sobic001G002000 Sobic001G002000 Sobic003G011300--Sobic001G002000 Sobic003G168100 Sobic003G168100 Sobic003G011300--Sobic003G168100 Sobic010G126000 Sobic010G126000 Sobic003G011300--Sobic010G126000 Sobic008G044100 Sobic008G044100 Sobic004G134200--Sobic008G044100 Sobic004G134200--Sobic001G374100 Sobic009G256300 Sobic009G256300 Sobic004G134200--Sobic009G256300 Sobic010G010700 Sobic010G010700 Sobic004G134200--Sobic010G010700 Sobic009G215500 Sobic009G215500 Sobic004G134200--Sobic009G215500 Sobic001G194200 Sobic001G194200 Sobic004G134200--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic004G134200--Sobic004G276400 Sobic004G134200--Sobic003G011300 Sobic001G172700 Sobic001G172700 Sobic004G134200--Sobic001G172700 Sobic001G374100--Sobic008G044100 Sobic001G374100--Sobic004G134200 Sobic001G374100--Sobic010G010700 Sobic003G155100 Sobic003G155100 Sobic001G374100--Sobic003G155100 Sobic006G252900 Sobic006G252900 Sobic001G374100--Sobic006G252900 Sobic001G374100--Sobic003G011300 Sobic008G001200 Sobic008G001200 Sobic001G374100--Sobic008G001200 Sobic006G259800 Sobic006G259800 Sobic001G374100--Sobic006G259800 Sobic001G456900 Sobic001G456900 Sobic001G374100--Sobic001G456900 Sobic006G216800 Sobic006G216800 Sobic007G116200--Sobic006G216800 Sobic007G116200--Sobic010G010700 Sobic002G134200 Sobic002G134200 Sobic007G116200--Sobic002G134200 Sobic006G182900 Sobic006G182900 Sobic007G116200--Sobic006G182900 Sobic004G359800 Sobic004G359800 Sobic007G116200--Sobic004G359800 Sobic010G139000 Sobic010G139000 Sobic007G116200--Sobic010G139000 Sobic010G256700 Sobic010G256700 Sobic007G116200--Sobic010G256700 Sobic004G209600 Sobic004G209600 Sobic007G116200--Sobic004G209600 Sobic003G280800 Sobic003G280800 Sobic007G116200--Sobic003G280800 Sobic010G032900--Sobic005G059800 Sobic010G032900--Sobic010G139000 Sobic003G170900 Sobic003G170900 Sobic010G032900--Sobic003G170900 Sobic010G032900--Sobic001G194200 Sobic010G032900--Sobic001G002000 Sobic010G032900--Sobic003G011300 Sobic004G291900 Sobic004G291900 Sobic010G032900--Sobic004G291900 Sobic002G294800 Sobic002G294800 Sobic010G032900--Sobic002G294800 Sobic010G032900--Sobic002G134200 Sobic009G038900 Sobic009G038900 Sobic004G042200--Sobic009G038900 Sobic010G002700 Sobic010G002700 Sobic004G042200--Sobic010G002700 Sobic003G191700 Sobic003G191700 Sobic004G042200--Sobic003G191700 Sobic006G050700 Sobic006G050700 Sobic004G042200--Sobic006G050700 Sobic003G220100 Sobic003G220100 Sobic004G042200--Sobic003G220100 Sobic004G042200--Sobic003G155100 Sobic010G243900 Sobic010G243900 Sobic004G042200--Sobic010G243900 Sobic005G106600 Sobic005G106600 Sobic004G042200--Sobic005G106600 Sobic006G133900 Sobic006G133900 Sobic004G042200--Sobic006G133900 Sobic005G059800--Sobic010G032900 Sobic005G059800--Sobic002G294800 Sobic006G185100 Sobic006G185100 Sobic005G059800--Sobic006G185100 Sobic005G059800--Sobic001G194200 Sobic005G059800--Sobic003G155100 Sobic005G059800--Sobic003G011300 Sobic005G059800--Sobic008G044100 Sobic008G070800 Sobic008G070800 Sobic005G059800--Sobic008G070800 Sobic003G398700 Sobic003G398700 Sobic005G059800--Sobic003G398700 Sobic001G002000--Sobic001G194200 Sobic001G289800 Sobic001G289800 Sobic001G002000--Sobic001G289800 Sobic001G002000--Sobic004G291900 Sobic003G422500 Sobic003G422500 Sobic001G002000--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic001G002000--Sobic010G247800 Sobic001G002000--Sobic010G010700 Sobic004G034900 Sobic004G034900 Sobic001G002000--Sobic004G034900 Sobic001G289600 Sobic001G289600 Sobic001G002000--Sobic001G289600 Sobic002G411600 Sobic002G411600 Sobic001G002000--Sobic002G411600 Sobic003G168100--Sobic010G126000 Sobic005G167700 Sobic005G167700 Sobic003G168100--Sobic005G167700 Sobic009G129100 Sobic009G129100 Sobic003G168100--Sobic009G129100 Sobic003G168100--Sobic008G044100 Sobic001G433800 Sobic001G433800 Sobic003G168100--Sobic001G433800 Sobic003G168100--Sobic003G398700 Sobic004G244900 Sobic004G244900 Sobic003G168100--Sobic004G244900 Sobic003G168100--Sobic004G134200 Sobic004G185800 Sobic004G185800 Sobic003G168100--Sobic004G185800 Sobic010G126000--Sobic003G168100 Sobic010G126000--Sobic008G044100 Sobic002G127550 Sobic002G127550 Sobic010G126000--Sobic002G127550 Sobic010G126000--Sobic005G167700 Sobic001G227200 Sobic001G227200 Sobic010G126000--Sobic001G227200 Sobic006G096900 Sobic006G096900 Sobic010G126000--Sobic006G096900 Sobic010G126000--Sobic003G398700 Sobic001G219600 Sobic001G219600 Sobic010G126000--Sobic001G219600 Sobic007G136800 Sobic007G136800 Sobic010G126000--Sobic007G136800
Octagon: transcription factors


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