Gene annotation
Transcriptome id Sobic.004G134200.1
Synonym Sb04g013160
Functional annotation GTP binding protein, putative, expressed
UniProt A0A194YPI2
Pfam PF02841 PF02263
Panther DB PTHR10751 PTHR10751:SF44
NCBI CDD KOG2037; Guanylate-binding protein
KEGG Orthology -
Gene Ontology GO:0005525; GTP binding GO:0003924GTPase activity


Orthologs (automatic annotation)
TAIR AT5G46070 : Guanylate-binding family protein
RAP-DB (Rice) LOC_Os02g20410.1 : GTP binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a019466
Brachypodium KQJ94590 , PNT66438
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G044100 expressed protein -
2 Sobic.001G374100 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
3 Sobic.009G256300 DNA binding protein, putative, expressed -
4 Sobic.010G010700 PHD-finger family protein, expressed -
5 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
6 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
7 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
8 Sobic.003G011300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
9 Sobic.001G172700 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
10 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
11 Sobic.003G168100 BZIP protein, putative, expressed -
12 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
13 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
14 Sobic.001G455600 cysteine synthase, putative, expressed K01738: cysteine synthase
15 Sobic.005G142800 exportin 1, putative, expressed K15436: TRPO3, transportin-3
16 Sobic.010G123600 WW domain containing protein, expressed -
17 Sobic.009G251500 chromosome segregation protein sudA, putative, expressed K06669: SMC3, structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
18 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
19 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
20 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -


Gene co-expression network
sample Sobic004G134200 Sobic004G134200 Sobic008G044100 Sobic008G044100 Sobic004G134200--Sobic008G044100 Sobic001G374100 Sobic001G374100 Sobic004G134200--Sobic001G374100 Sobic009G256300 Sobic009G256300 Sobic004G134200--Sobic009G256300 Sobic010G010700 Sobic010G010700 Sobic004G134200--Sobic010G010700 Sobic009G215500 Sobic009G215500 Sobic004G134200--Sobic009G215500 Sobic001G194200 Sobic001G194200 Sobic004G134200--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic004G134200--Sobic004G276400 Sobic003G011300 Sobic003G011300 Sobic004G134200--Sobic003G011300 Sobic001G172700 Sobic001G172700 Sobic004G134200--Sobic001G172700 Sobic008G044100--Sobic010G010700 Sobic008G044100--Sobic004G134200 Sobic008G044100--Sobic001G374100 Sobic003G155100 Sobic003G155100 Sobic008G044100--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G044100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic008G044100--Sobic001G230000 Sobic008G001200 Sobic008G001200 Sobic008G044100--Sobic008G001200 Sobic003G389200 Sobic003G389200 Sobic008G044100--Sobic003G389200 Sobic002G316600 Sobic002G316600 Sobic008G044100--Sobic002G316600 Sobic001G374100--Sobic008G044100 Sobic001G374100--Sobic004G134200 Sobic001G374100--Sobic010G010700 Sobic001G374100--Sobic003G155100 Sobic006G252900 Sobic006G252900 Sobic001G374100--Sobic006G252900 Sobic001G374100--Sobic003G011300 Sobic001G374100--Sobic008G001200 Sobic006G259800 Sobic006G259800 Sobic001G374100--Sobic006G259800 Sobic001G456900 Sobic001G456900 Sobic001G374100--Sobic001G456900 Sobic010G112100 Sobic010G112100 Sobic009G256300--Sobic010G112100 Sobic009G256300--Sobic003G389200 Sobic004G242400 Sobic004G242400 Sobic009G256300--Sobic004G242400 Sobic009G256300--Sobic010G010700 Sobic010G123600 Sobic010G123600 Sobic009G256300--Sobic010G123600 Sobic003G360400 Sobic003G360400 Sobic009G256300--Sobic003G360400 Sobic009G109200 Sobic009G109200 Sobic009G256300--Sobic009G109200 Sobic009G256300--Sobic004G276400 Sobic001G542400 Sobic001G542400 Sobic009G256300--Sobic001G542400 Sobic010G010700--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic010G010700--Sobic007G062800 Sobic002G008900 Sobic002G008900 Sobic010G010700--Sobic002G008900 Sobic005G112300 Sobic005G112300 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic003G186000 Sobic003G186000 Sobic010G010700--Sobic003G186000 Sobic001G530900 Sobic001G530900 Sobic009G215500--Sobic001G530900 Sobic009G215500--Sobic008G044100 Sobic009G215500--Sobic004G134200 Sobic009G215500--Sobic003G155100 Sobic006G031800 Sobic006G031800 Sobic009G215500--Sobic006G031800 Sobic006G219600 Sobic006G219600 Sobic009G215500--Sobic006G219600 Sobic001G133000 Sobic001G133000 Sobic009G215500--Sobic001G133000 Sobic001G465700 Sobic001G465700 Sobic009G215500--Sobic001G465700 Sobic006G050700 Sobic006G050700 Sobic009G215500--Sobic006G050700 Sobic004G291900 Sobic004G291900 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic005G001000 Sobic005G001000 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic001G194200--Sobic010G206900 Sobic001G194200--Sobic004G034900 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic010G105200 Sobic010G105200 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G276400--Sobic004G291900 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic003G011300--Sobic004G134200 Sobic003G011300--Sobic001G374100 Sobic007G116200 Sobic007G116200 Sobic003G011300--Sobic007G116200 Sobic010G032900 Sobic010G032900 Sobic003G011300--Sobic010G032900 Sobic004G042200 Sobic004G042200 Sobic003G011300--Sobic004G042200 Sobic005G059800 Sobic005G059800 Sobic003G011300--Sobic005G059800 Sobic001G002000 Sobic001G002000 Sobic003G011300--Sobic001G002000 Sobic003G168100 Sobic003G168100 Sobic003G011300--Sobic003G168100 Sobic010G126000 Sobic010G126000 Sobic003G011300--Sobic010G126000 Sobic001G172700--Sobic004G134200 Sobic001G172700--Sobic009G215500 Sobic004G025800 Sobic004G025800 Sobic001G172700--Sobic004G025800 Sobic006G137600 Sobic006G137600 Sobic001G172700--Sobic006G137600 Sobic003G434700 Sobic003G434700 Sobic001G172700--Sobic003G434700 Sobic010G053600 Sobic010G053600 Sobic001G172700--Sobic010G053600 Sobic001G172700--Sobic008G044100 Sobic005G142800 Sobic005G142800 Sobic001G172700--Sobic005G142800 Sobic010G051700 Sobic010G051700 Sobic001G172700--Sobic010G051700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.