Gene annotation
Transcriptome id Sobic.009G251500.1
Synonym SMC3, TTN7
Functional annotation chromosome segregation protein sudA, putative, expressed
UniProt A0A1B6PAK6
Pfam PF13304 PF13476 PF06470
Panther DB PTHR18937 PTHR18937:SF8
NCBI CDD -
KEGG Orthology K06669; SMC3, structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Gene Ontology GO:0005524; ATP binding GO:0005694chromosome GO:0005515protein binding GO:0008280cohesin complex GO:0007064mitotic sister chromatid cohesion GO:0006281DNA repair GO:0003682chromatin binding


Orthologs (automatic annotation)
TAIR AT2G27170 : Structural maintenance of chromosomes (SMC) family protein
RAP-DB (Rice) LOC_Os02g04080.1 : chromosome segregation protein sudA, putative, expressed
MaizeGDB (Corn) Zm00025a044785
Brachypodium KQK14663
Barley HORVU1Hr1G093520.14 , HORVU1Hr1G093520.15 , HORVU1Hr1G093520.12 , HORVU1Hr1G093520.13 , HORVU1Hr1G093520.10 , HORVU1Hr1G093520.11 , HORVU1Hr1G093520.8 , HORVU1Hr1G093520.9 , HORVU1Hr1G093520.4 , HORVU1Hr1G093520.5 , HORVU1Hr1G093520.6 , HORVU1Hr1G093520.7 , HORVU1Hr1G093520.1 , HORVU1Hr1G093520.2 , HORVU1Hr1G093520.3 , HORVU2Hr1G104520.4 , HORVU2Hr1G104520.5 , HORVU2Hr1G104520.6 , HORVU2Hr1G104520.2
Wheat TraesCS2D02G458200 , TraesCS1A02G428700 , TraesCS1A02G428700 , TraesCS1A02G428700 , TraesCS1D02G438000 , TraesCS1D02G438000 , TraesCS1D02G438000 , TraesCS2B02G479900 , TraesCS1B02G463400 , TraesCS2A02G457500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
2 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
3 Sobic.009G256300 DNA binding protein, putative, expressed -
4 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
5 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
6 Sobic.010G010700 PHD-finger family protein, expressed -
7 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
8 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
9 Sobic.001G457900 expressed protein -
10 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
11 Sobic.003G428100 FYVE zinc finger domain containing protein, expressed -
12 Sobic.001G363500 DIRP family protein, putative, expressed -
13 Sobic.004G223000 MIF4G domain containing protein, putative, expressed K14327: UPF2, regulator of nonsense transcripts 2
14 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
15 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
16 Sobic.007G063000 expressed protein -
17 Sobic.003G196300 DNA binding protein, putative, expressed -
18 Sobic.010G123600 WW domain containing protein, expressed -
19 Sobic.007G062800 SET domain containing protein, expressed -
20 Sobic.004G134200 GTP binding protein, putative, expressed -


Gene co-expression network
sample Sobic009G251500 Sobic009G251500 Sobic004G242400 Sobic004G242400 Sobic009G251500--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic009G251500--Sobic003G389200 Sobic009G256300 Sobic009G256300 Sobic009G251500--Sobic009G256300 Sobic003G360400 Sobic003G360400 Sobic009G251500--Sobic003G360400 Sobic001G230000 Sobic001G230000 Sobic009G251500--Sobic001G230000 Sobic010G010700 Sobic010G010700 Sobic009G251500--Sobic010G010700 Sobic004G276400 Sobic004G276400 Sobic009G251500--Sobic004G276400 Sobic002G133300 Sobic002G133300 Sobic009G251500--Sobic002G133300 Sobic001G457900 Sobic001G457900 Sobic009G251500--Sobic001G457900 Sobic007G062800 Sobic007G062800 Sobic004G242400--Sobic007G062800 Sobic009G109200 Sobic009G109200 Sobic004G242400--Sobic009G109200 Sobic010G105200 Sobic010G105200 Sobic004G242400--Sobic010G105200 Sobic004G242400--Sobic004G276400 Sobic004G242400--Sobic010G010700 Sobic010G112100 Sobic010G112100 Sobic004G242400--Sobic010G112100 Sobic004G314000 Sobic004G314000 Sobic004G242400--Sobic004G314000 Sobic004G242400--Sobic009G256300 Sobic001G433800 Sobic001G433800 Sobic004G242400--Sobic001G433800 Sobic003G389200--Sobic009G256300 Sobic010G206900 Sobic010G206900 Sobic003G389200--Sobic010G206900 Sobic003G389200--Sobic003G360400 Sobic003G389200--Sobic010G112100 Sobic003G389200--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic003G389200--Sobic001G365900 Sobic001G540400 Sobic001G540400 Sobic003G389200--Sobic001G540400 Sobic007G105100 Sobic007G105100 Sobic003G389200--Sobic007G105100 Sobic003G389200--Sobic001G230000 Sobic009G256300--Sobic010G112100 Sobic009G256300--Sobic003G389200 Sobic009G256300--Sobic004G242400 Sobic009G256300--Sobic010G010700 Sobic010G123600 Sobic010G123600 Sobic009G256300--Sobic010G123600 Sobic009G256300--Sobic003G360400 Sobic009G256300--Sobic009G109200 Sobic009G256300--Sobic004G276400 Sobic001G542400 Sobic001G542400 Sobic009G256300--Sobic001G542400 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic003G360400--Sobic009G256300 Sobic001G230000--Sobic010G206900 Sobic003G155100 Sobic003G155100 Sobic001G230000--Sobic003G155100 Sobic008G001200 Sobic008G001200 Sobic001G230000--Sobic008G001200 Sobic001G230000--Sobic004G276400 Sobic004G223000 Sobic004G223000 Sobic001G230000--Sobic004G223000 Sobic001G230000--Sobic009G256300 Sobic001G230000--Sobic010G010700 Sobic001G298900 Sobic001G298900 Sobic001G230000--Sobic001G298900 Sobic008G044100 Sobic008G044100 Sobic001G230000--Sobic008G044100 Sobic010G010700--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic001G194200 Sobic001G194200 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic002G008900 Sobic002G008900 Sobic010G010700--Sobic002G008900 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic003G186000 Sobic003G186000 Sobic010G010700--Sobic003G186000 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G291900 Sobic004G291900 Sobic004G276400--Sobic004G291900 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic002G133300--Sobic004G276400 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic002G133300--Sobic001G194200 Sobic001G493700 Sobic001G493700 Sobic002G133300--Sobic001G493700 Sobic001G457900--Sobic002G133300 Sobic003G196300 Sobic003G196300 Sobic001G457900--Sobic003G196300 Sobic001G117200 Sobic001G117200 Sobic001G457900--Sobic001G117200 Sobic008G092600 Sobic008G092600 Sobic001G457900--Sobic008G092600 Sobic001G273700 Sobic001G273700 Sobic001G457900--Sobic001G273700 Sobic001G457900--Sobic003G072200 Sobic003G428100 Sobic003G428100 Sobic001G457900--Sobic003G428100 Sobic001G196500 Sobic001G196500 Sobic001G457900--Sobic001G196500 Sobic003G229500 Sobic003G229500 Sobic001G457900--Sobic003G229500
Octagon: transcription factors


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